Subcellular Localization
min:
: max
Winner_takes_all: peroxisome, cytosol, plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plasma membrane 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G427700.1 | Wheat | cytosol, peroxisome, plasma membrane | 93.81 | 97.33 |
| TraesCS1A01G399600.1 | Wheat | cytosol | 73.2 | 73.58 |
| Os05t0564800-01 | Rice | plasma membrane | 46.39 | 70.87 |
| EES18686 | Sorghum | plasma membrane | 61.34 | 68.39 |
| Zm00001d009578_P001 | Maize | plasma membrane | 57.22 | 66.07 |
| VIT_19s0135g00070.t01 | Wine grape | plasma membrane | 40.72 | 55.24 |
| TraesCS3D01G244000.1 | Wheat | cytosol, peroxisome, plasma membrane | 53.09 | 55.08 |
| CDX83927 | Canola | plasma membrane | 43.81 | 53.12 |
| AT1G17080.1 | Thale cress | plasma membrane | 41.75 | 52.6 |
| Bra040984.1-P | Field mustard | plasma membrane | 41.75 | 51.92 |
| CDX96793 | Canola | plasma membrane | 41.75 | 51.92 |
| KRH21829 | Soybean | plasma membrane | 42.78 | 51.88 |
| CDY21766 | Canola | plasma membrane | 37.63 | 50.34 |
| TraesCS3D01G171700.1 | Wheat | cytosol, plasma membrane, plastid | 39.18 | 50.33 |
| CDX81802 | Canola | plasma membrane | 37.63 | 49.66 |
| Bra026690.1-P | Field mustard | plasma membrane | 37.11 | 48.32 |
| AT1G53560.1 | Thale cress | plasma membrane | 36.6 | 46.41 |
| Bra001558.1-P | Field mustard | cytosol, mitochondrion, plasma membrane | 28.35 | 45.45 |
| GSMUA_Achr7P25370_001 | Banana | cytosol, mitochondrion, plasma membrane | 41.24 | 45.2 |
| PGSC0003DMT400022071 | Potato | cytosol, nucleus, plasma membrane | 36.08 | 42.68 |
| Bra039680.1-P | Field mustard | cytosol | 33.51 | 42.48 |
| CDY24088 | Canola | cytosol | 33.51 | 42.48 |
| KRH13519 | Soybean | cytosol | 37.63 | 42.2 |
| Solyc12g011440.1.1 | Tomato | cytosol, nucleus, plasma membrane | 35.05 | 41.46 |
| CDX75777 | Canola | cytosol | 28.35 | 39.57 |
| TraesCS7D01G345900.1 | Wheat | plastid | 30.41 | 39.07 |
| CDX98477 | Canola | cytosol | 27.84 | 38.85 |
| CDX97586 | Canola | cytosol | 27.84 | 38.57 |
| AT3G14595.1 | Thale cress | cytosol, peroxisome, plasma membrane | 25.77 | 37.88 |
| Solyc07g061970.2.1 | Tomato | cytosol | 36.08 | 35.9 |
| Bra016620.1-P | Field mustard | cytosol, endoplasmic reticulum, peroxisome | 42.78 | 32.94 |
| PGSC0003DMT400018173 | Potato | cytosol, endoplasmic reticulum, nucleus | 35.05 | 30.63 |
Protein Annotations
| EnsemblPlants:TraesCS1D01G407300.1 | EnsemblPlantsGene:TraesCS1D01G407300 | InterPro:50S_L18Ae/Ribosomal_L18a/L20 | PANTHER:PTHR10052 | PANTHER:PTHR10052:SF16 | SEG:seg |
| TMHMM:TMhelix | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1D:+:470410039..470412563
Molecular Weight (calculated)
20615.7 Da
IEP (calculated)
8.317
GRAVY (calculated)
-0.239
Length
194 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAGQDLEAG AGDGGEKKMA HSSSSGPLPP SEPPHLRGQD PAQYQYGTFH PPAPHPDVRP HPPVGFPQPA PPPGFAAGGY QQQQQKQPYA PADPYYAQGY
101: QAAPGYGPVV QGRPVEGRPV RMRRLPCCGL GMGWLLFIAG FFLAAIPWYI GAFVLICVRV HDHREKPGYV ACTVAAIIAA IVIPLGVTKG TDSW
101: QAAPGYGPVV QGRPVEGRPV RMRRLPCCGL GMGWLLFIAG FFLAAIPWYI GAFVLICVRV HDHREKPGYV ACTVAAIIAA IVIPLGVTKG TDSW
001: MGHGEEDKSK GFASEEGNQH HQYGTFQGVS NYPPPQNSAP VTGFPQPSAP PGVYDSGAPY YAHGYQTVPV HGGVAEGRPV RQRRLPCCGI GLGWFLFIVG
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
101: FFLGAIPWYV GLFIMMFGRR IDYREKPGYI ACTIAAILAT IAVILGVSKG ADDW
Arabidopsis Description
At1g17080/F6I1.24 [Source:UniProtKB/TrEMBL;Acc:Q9SHG7]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.