Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- nucleus 2
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G257000.1 | Wheat | cytosol, golgi, nucleus, plastid | 95.29 | 96.51 |
| TraesCS5B01G256500.1 | Wheat | cytosol, golgi, nucleus, plastid | 92.21 | 93.22 |
| HORVU5Hr1G071910.1 | Barley | nucleus | 92.21 | 92.88 |
| Os09t0481300-01 | Rice | nucleus | 58.15 | 60.91 |
| EER96942 | Sorghum | cytosol, golgi, nucleus, plastid | 59.24 | 60.33 |
| Zm00001d005997_P002 | Maize | plastid | 57.79 | 59.29 |
| Zm00001d020879_P001 | Maize | cytosol, golgi, nucleus, plastid | 42.21 | 58.1 |
| TraesCS7D01G238200.1 | Wheat | cytosol | 48.91 | 50.28 |
| GSMUA_Achr10P... | Banana | cytosol | 27.72 | 30.36 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 32.25 | 29.92 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 30.62 | 28.45 |
| Solyc07g066170.2.1 | Tomato | nucleus | 15.58 | 25.67 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 18.48 | 25.5 |
| CDX89333 | Canola | nucleus | 22.28 | 24.85 |
| Bra026434.1-P | Field mustard | nucleus | 22.28 | 24.85 |
| CDY24192 | Canola | plastid | 13.41 | 24.42 |
| CDX94330 | Canola | nucleus | 21.56 | 24.24 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 17.39 | 24.06 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 26.09 | 23.45 |
| PGSC0003DMT400022426 | Potato | nucleus | 24.64 | 23.21 |
| CDY17403 | Canola | nucleus | 11.41 | 22.83 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 11.41 | 22.83 |
| AT5G56210.1 | Thale cress | nucleus | 21.01 | 22.79 |
| TraesCS2D01G332000.1 | Wheat | cytosol | 21.01 | 22.75 |
| AT4G26455.1 | Thale cress | nucleus | 20.11 | 22.7 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 17.21 | 22.62 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 11.23 | 22.22 |
| KRH56393 | Soybean | cytosol | 23.37 | 21.98 |
| PGSC0003DMT400056956 | Potato | nucleus | 23.73 | 21.91 |
| KRH62532 | Soybean | endoplasmic reticulum | 22.83 | 21.54 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 17.21 | 21.49 |
| CDX82542 | Canola | plastid | 17.03 | 21.22 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 19.02 | 20.27 |
Protein Annotations
| EnsemblPlants:TraesCS5D01G265600.1 | EnsemblPlantsGene:TraesCS5D01G265600 | ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF1 | SEG:seg |
| MapMan:20.4.2.1.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:369871677..369875385
Molecular Weight (calculated)
58561.7 Da
IEP (calculated)
4.875
GRAVY (calculated)
-0.567
Length
552 amino acids
Sequence
(BLAST)
(BLAST)
001: MDSGANSVGS VGESPPPPLS PPGRPAAKGR GLRRWRRIPR GHHDDEGGSP AGPVAASVAA AAGPASAEVD LAQLHKRRLP VGADAPKGKQ EAAAEEDSPV
101: ASVESSFVPP EAPPSPSPAP APGPALTSLD PDLGLLIASA GFSVGAGGAD SDNSDDRTSK SSTVLPRHDF SLAGFGRDRD RARSRAPGAA AHAKNLRTAR
201: ARGAGARAVS AASSTVEPEN SRSSVESDLR STGAAHARKS SAGISSNGVH KFLYTDGDHS DDEAPSEHLR SAAGGFYKDN GSAVGRMAMG NGDLYAHDHG
301: FHEGSIGKGE NGGIHSGLDP YTDSISMLQS AQEALENELQ MFVEIGKESS DNSTDNYDEN EWSSSPNCED FSEEISEKLK LLESKLEEAS LLIDEKDSRI
401: LELDTLNKTK PGETALYNSK LLSLQSEVDQ LLMEKMEAEI QCFILKRASE AWQPQTEGQG TLQEAQKTLS EDHKQLEVKL RHTENRARTL EEMVEKLESQ
501: CKELSNASEV LKLQAGASRA SLFCSVQLVL LCIAAWTFVA RFLPSPPEFV PT
101: ASVESSFVPP EAPPSPSPAP APGPALTSLD PDLGLLIASA GFSVGAGGAD SDNSDDRTSK SSTVLPRHDF SLAGFGRDRD RARSRAPGAA AHAKNLRTAR
201: ARGAGARAVS AASSTVEPEN SRSSVESDLR STGAAHARKS SAGISSNGVH KFLYTDGDHS DDEAPSEHLR SAAGGFYKDN GSAVGRMAMG NGDLYAHDHG
301: FHEGSIGKGE NGGIHSGLDP YTDSISMLQS AQEALENELQ MFVEIGKESS DNSTDNYDEN EWSSSPNCED FSEEISEKLK LLESKLEEAS LLIDEKDSRI
401: LELDTLNKTK PGETALYNSK LLSLQSEVDQ LLMEKMEAEI QCFILKRASE AWQPQTEGQG TLQEAQKTLS EDHKQLEVKL RHTENRARTL EEMVEKLESQ
501: CKELSNASEV LKLQAGASRA SLFCSVQLVL LCIAAWTFVA RFLPSPPEFV PT
001: MDLESESSVL ESVEDNNGLI GDLDKELNSP VETSPLISKG FGLRKWKRRL RRDLVKDDTS VSMENSKALK RVLSGLVDPN AKQMHLPGPE VRQDSVGSVG
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
Arabidopsis Description
WIP2WPP domain-interacting protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH18]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.