Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- golgi 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G242700.1 | Wheat | plasma membrane | 98.41 | 98.41 |
| EER96079 | Sorghum | extracellular, mitochondrion, plasma membrane, plastid | 86.51 | 86.85 |
| Zm00001d019194_P004 | Maize | plasma membrane | 85.71 | 86.06 |
| Zm00001d005229_P001 | Maize | plasma membrane | 79.76 | 84.45 |
| Os07t0223700-00 | Rice | plasma membrane | 84.13 | 68.61 |
| GSMUA_Achr4P02350_001 | Banana | plasma membrane | 62.3 | 63.56 |
| Bra037108.1-P | Field mustard | extracellular, mitochondrion, plasma membrane, vacuole | 24.6 | 63.27 |
| TraesCS2A01G244700.1 | Wheat | plasma membrane | 82.54 | 61.72 |
| VIT_06s0004g00110.t01 | Wine grape | mitochondrion | 55.56 | 57.14 |
| Solyc01g050070.2.1 | Tomato | extracellular, plasma membrane, vacuole | 49.21 | 56.36 |
| KRH50507 | Soybean | extracellular, mitochondrion, plasma membrane, vacuole | 51.98 | 52.4 |
| KRG89467 | Soybean | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 51.59 | 52.21 |
| GSMUA_Achr4P10280_001 | Banana | plasma membrane | 60.71 | 50.66 |
| CDY26095 | Canola | extracellular, mitochondrion, plasma membrane, vacuole | 49.21 | 50.2 |
| CDY56020 | Canola | extracellular, mitochondrion, plasma membrane, vacuole | 50.79 | 50.0 |
| Bra030853.1-P | Field mustard | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 51.19 | 49.62 |
| CDY08251 | Canola | extracellular, mitochondrion, plasma membrane, vacuole | 48.81 | 48.43 |
| AT1G55535.1 | Thale cress | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 49.6 | 48.08 |
| AT3G13420.3 | Thale cress | mitochondrion | 44.84 | 42.8 |
| CDY10553 | Canola | endoplasmic reticulum, mitochondrion, plasma membrane, vacuole | 49.6 | 39.19 |
| CDY43992 | Canola | mitochondrion, plasma membrane | 43.65 | 36.91 |
| Bra027437.1-P | Field mustard | mitochondrion, plasma membrane | 43.65 | 36.91 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G262900.1 | EnsemblPlantsGene:TraesCS2B01G262900 | PANTHER:PTHR35471 | TMHMM:TMhelix | MapMan:35.2 | : |
Description
No Description!
Coordinates
chr2B:+:349907256..349931609
Molecular Weight (calculated)
27783.1 Da
IEP (calculated)
8.300
GRAVY (calculated)
0.144
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MHWCPGIGPR VRSFLRDYDA LQSFALALIY LQIGCALIGS LGALFNGVLV INLVIGLFAV VAIESSSQRL GRTYAVLLFF AIVLDVAWFI LFSHAIWNST
101: PDEKYGQLFV FSLRLALWMQ TIGFSVRFLS SFIWIQMYRL GVSSSTPTYY EANDARNSFL SPRSNSVRRG SMADDILGGS IYDPSYYSSL FEDVRNNACN
201: HQGDKQSGGN DGGSTSAGQS PRLKSFGSRS FLSNDVEAGL RRPLNSCSVE TS
101: PDEKYGQLFV FSLRLALWMQ TIGFSVRFLS SFIWIQMYRL GVSSSTPTYY EANDARNSFL SPRSNSVRRG SMADDILGGS IYDPSYYSSL FEDVRNNACN
201: HQGDKQSGGN DGGSTSAGQS PRLKSFGSRS FLSNDVEAGL RRPLNSCSVE TS
001: MMLCGSLRDR IHPWLRDYVK LQSLAVFLIY AQIGCALIGS LGALYNGVLL INLAIALFAL VAIESNSQSL GRTYAVLLFC ALLLDISWFI LFTEEIWSIS
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPEEM CLKQTGMASI
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPEEM CLKQTGMASI
Arabidopsis Description
At1g55535 [Source:UniProtKB/TrEMBL;Acc:Q5XF13]
SUBAcon: [mitochondrion,endoplasmic reticulum,vacuole,plasma membrane]
SUBAcon: [mitochondrion,endoplasmic reticulum,vacuole,plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.