Factsheet for VIT_06s0004g00110.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
cytosol 1
mitochondrion 3
extracellular 2
plasma membrane 3
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane, plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_15s0048g00220.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55535.1	VIT_15s0048g00220.t01	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037108.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, vacuole	29.8	74.49
Solyc01g050070.2.1	Tomato	extracellular, plasma membrane, vacuole	62.86	70.0
KRH50507	Soybean	extracellular, mitochondrion, plasma membrane, vacuole	66.94	65.6
KRG89467	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	66.12	65.06
CDY26095	Canola	extracellular, mitochondrion, plasma membrane, vacuole	62.04	61.54
GSMUA_Achr4P02350_001	Banana	plasma membrane	61.63	61.13
CDY56020	Canola	extracellular, mitochondrion, plasma membrane, vacuole	61.22	58.59
Bra030853.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	62.04	58.46
CDY08251	Canola	extracellular, mitochondrion, plasma membrane, vacuole	60.41	58.27
AT1G55535.1	Thale cress	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	61.63	58.08
TraesCS2B01G262900.1	Wheat	plasma membrane	57.14	55.56
TraesCS2D01G242700.1	Wheat	plasma membrane	56.73	55.16
Zm00001d005229_P001	Maize	plasma membrane	52.65	54.2
Zm00001d019194_P004	Maize	plasma membrane	55.51	54.18
EER96079	Sorghum	extracellular, mitochondrion, plasma membrane, plastid	55.1	53.78
AT3G13420.3	Thale cress	mitochondrion	57.55	53.41
GSMUA_Achr4P10280_001	Banana	plasma membrane	61.63	50.0
CDY10553	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	61.22	47.02
Os07t0223700-00	Rice	plasma membrane	57.14	45.31
CDY43992	Canola	mitochondrion, plasma membrane	54.69	44.97
Bra027437.1-P	Field mustard	mitochondrion, plasma membrane	54.69	44.97
TraesCS2A01G244700.1	Wheat	plasma membrane	51.84	37.69

Protein Annotations

ArrayExpress:VIT_06s0004g00110	EMBL:FN594951	EnsemblPlants:VIT_06s0004g00110.t01	EnsemblPlantsGene:VIT_06s0004g00110	EntrezGene:100245017	EntrezGene:LOC100245017
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR35471	ProteinID:CBI16569	ProteinID:CBI16569.3
RefSeq:XP_002285768	RefSeq:XP_002285768.1	TMHMM:TMhelix	unigene:Vvi.23902	UniParc:UPI00019836A3	UniProt:D7SLP1
wikigene:100245017	wikigene:LOC100245017	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr6:+:247748..255244

Molecular Weight (calculated)

27375.7 Da

IEP (calculated)

4.962

GRAVY (calculated)

0.271

Length

245 amino acids

Sequence
(BLAST)

001: MMLCSSFRSR IQNFLRDYDR LQFFAVILIY IQIGCALVGS LGALYNGVLL INLAVALFAL VAIESSSQSL GRTYAVLLFF SILLDISWFT LFSHEIWNIS
101: SKDFGHFFIF SVKLTLSMEI IGFSVRLSSS FLWIQMYRLG VSYVDSTVSR EADFDLRNSF LNPTTPTIVR QSSDSDEFLG GSIYDPAYYS SLFEDGHGNQ
201: YEGQNYMAEV GSTSAAGSSP QLKASIGRSF QAVDVETAIC NRQKN

Best Arabidopsis Sequence Match ( AT1G55535.1 )
(BLAST)

001: MMLCGSLRDR IHPWLRDYVK LQSLAVFLIY AQIGCALIGS LGALYNGVLL INLAIALFAL VAIESNSQSL GRTYAVLLFC ALLLDISWFI LFTEEIWSIS
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPEEM CLKQTGMASI

Arabidopsis Description

At1g55535 [Source:UniProtKB/TrEMBL;Acc:Q5XF13]
SUBAcon: [mitochondrion,endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.