Factsheet for TraesCS2A01G244700.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

mitochondrion 2
plasma membrane 3
extracellular 1
endoplasmic reticulum 2
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	endoplasmic reticulum, mitochondrion, plasma membrane
iPSORT:	mitochondrion
MultiLoc:	plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G368500.1
TraesCS2B01G385700.2
TraesCS2D01G365300.2
TraesCS6A01G237600.1
TraesCS6B01G266100.1
TraesCS6D01G220300.1
TraesCS7A01G300700.1
TraesCS7D01G296400.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55535.1	TraesCS2A01G368500.1	AT3G60600.1	21798944
AT1G55535.1	TraesCS2B01G385700.2	AT3G60600.1	21798944
AT1G55535.1	TraesCS2D01G365300.2	AT3G60600.1	21798944
AT1G55535.1	TraesCS6A01G237600.1	AT3G60600.1	21798944
AT1G55535.1	TraesCS6B01G266100.1	AT3G60600.1	21798944
AT1G55535.1	TraesCS6D01G220300.1	AT3G60600.1	21798944
AT1G55535.1	TraesCS7A01G300700.1	AT3G60600.1	21798944
AT1G55535.1	TraesCS7D01G296400.1	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2D01G242700.1	Wheat	plasma membrane	61.72	82.54
TraesCS2B01G262900.1	Wheat	plasma membrane	61.72	82.54
Zm00001d005229_P001	Maize	plasma membrane	54.3	76.89
EER96079	Sorghum	extracellular, mitochondrion, plasma membrane, plastid	56.38	75.7
Zm00001d019194_P004	Maize	plasma membrane	55.79	74.9
Bra037108.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, vacuole	18.69	64.29
Os07t0223700-00	Rice	plasma membrane	56.97	62.14
GSMUA_Achr4P02350_001	Banana	plasma membrane	43.03	58.7
Solyc01g050070.2.1	Tomato	extracellular, plasma membrane, vacuole	35.31	54.09
VIT_06s0004g00110.t01	Wine grape	mitochondrion	37.69	51.84
KRG89467	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	36.2	49.0
KRH50507	Soybean	extracellular, mitochondrion, plasma membrane, vacuole	36.2	48.8
GSMUA_Achr4P10280_001	Banana	plasma membrane	43.32	48.34
CDY26095	Canola	extracellular, mitochondrion, plasma membrane, vacuole	34.42	46.96
CDY56020	Canola	extracellular, mitochondrion, plasma membrane, vacuole	35.61	46.88
Bra030853.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	35.91	46.54
CDY08251	Canola	extracellular, mitochondrion, plasma membrane, vacuole	34.72	46.06
AT1G55535.1	Thale cress	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	35.01	45.38
AT3G13420.3	Thale cress	mitochondrion	31.16	39.77
CDY10553	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	36.5	38.56
CDY43992	Canola	mitochondrion, plasma membrane	30.56	34.56
Bra027437.1-P	Field mustard	mitochondrion, plasma membrane	30.56	34.56

Protein Annotations

EnsemblPlants:TraesCS2A01G244700.1

EnsemblPlantsGene:TraesCS2A01G244700

PANTHER:PTHR35471

TMHMM:TMhelix

MapMan:35.2

Description

No Description!

Coordinates

chr2A:-:350403568..350413217

Molecular Weight (calculated)

37126.0 Da

IEP (calculated)

8.473

GRAVY (calculated)

0.157

Length

337 amino acids

Sequence
(BLAST)

001: MHWCPGIGPR ARSFLRDYDA LQSLALALIY LQIGCALIGS LGALFNGVLV INLVIGLFAV VAIESSSQRL GRTYAVLLFF AIVLDVAWFI LFSHAIWNST
101: PDEKYGQLFV FSLRLALWMQ TIGFSVRFLS SFIWIQMYRL GVSSSTPTYY EANDARNSFL SPRSNSVRRG SMADDILGGS IYDPSYYSSL FEDVRNNACN
201: HQKTRSAMQS GTSSCTSGFC YGVCMSMSRQ WKHYVGATPP CELAHTPLKL AVVAQGVEHD KPAHELLVKE DLGHVGGVAD LRRETGIALR EHAEAMLGTK
301: IRRGQPAICM NRQARKSLHG GVLLPISELL SCTSGDI

Best Arabidopsis Sequence Match ( AT1G55535.1 )
(BLAST)

001: MMLCGSLRDR IHPWLRDYVK LQSLAVFLIY AQIGCALIGS LGALYNGVLL INLAIALFAL VAIESNSQSL GRTYAVLLFC ALLLDISWFI LFTEEIWSIS
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPEEM CLKQTGMASI

Arabidopsis Description

At1g55535 [Source:UniProtKB/TrEMBL;Acc:Q5XF13]
SUBAcon: [mitochondrion,endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.