CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, extracellular, vacuole

Predictor Summary:

nucleus 1
mitochondrion 2
extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67837
CDX71796
CDX89063
CDY41153
CDY48365

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55535.1	CDX67837	AT3G60600.1	21798944
AT1G55535.1	CDX71796	AT3G60600.1	21798944
AT1G55535.1	CDX89063	AT3G60600.1	21798944
AT1G55535.1	CDY41153	AT3G60600.1	21798944
AT1G55535.1	CDY48365	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra037108.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, vacuole	37.65	94.9
CDY08251	Canola	extracellular, mitochondrion, plasma membrane, vacuole	94.74	92.13
CDY56020	Canola	extracellular, mitochondrion, plasma membrane, vacuole	88.26	85.16
AT1G55535.1	Thale cress	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	89.07	84.62
CDY10553	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	85.83	66.46
KRG89467	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	65.99	65.46
KRH50507	Soybean	extracellular, mitochondrion, plasma membrane, vacuole	65.18	64.4
VIT_06s0004g00110.t01	Wine grape	mitochondrion	61.54	62.04
Solyc01g050070.2.1	Tomato	extracellular, plasma membrane, vacuole	53.44	60.0
CDY43992	Canola	mitochondrion, plasma membrane	64.78	53.69
GSMUA_Achr4P02350_001	Banana	plasma membrane	52.63	52.63
EER96079	Sorghum	extracellular, mitochondrion, plasma membrane, plastid	50.61	49.8
Zm00001d019194_P004	Maize	plasma membrane	50.61	49.8
TraesCS2D01G242700.1	Wheat	plasma membrane	50.61	49.6
TraesCS2B01G262900.1	Wheat	plasma membrane	50.2	49.21
Zm00001d005229_P001	Maize	plasma membrane	47.37	49.16
GSMUA_Achr4P10280_001	Banana	plasma membrane	57.89	47.35
Os07t0223700-00	Rice	plasma membrane	49.39	39.48
TraesCS2A01G244700.1	Wheat	plasma membrane	46.96	34.42

Protein Annotations

EnsemblPlants:CDY26095	EnsemblPlantsGene:GSBRNA2T00034719001	GO:A0A078GI29	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR35471	ProteinID:CDY26095	ProteinID:CDY26095.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EF3D97
UniProt:A0A078GI29	MapMan:35.2	:	:	:	:

Description

BnaC06g11010DBnaC06g11010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GI29]

Coordinates

chrLK032185:+:213605..215380

Molecular Weight (calculated)

27139.8 Da

IEP (calculated)

4.666

GRAVY (calculated)

0.320

Length

247 amino acids

Sequence
(BLAST)

001: MMLCGSLRDR IQPWLRDYVK LQSLAVILIY AQIGCALIGS LGALYNGVLL INLVIALFAL VAIESNSQSL GRTYAVLLLC ALLLDISWFI LFTQEIWSIS
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG ASIVETDSDL RNSFLNPPTP AIDRQRSGAE EILGGSIYDP AYYASLFEEA QSNLSSPNAT
201: QVNHYSAENN GSPSAAEASQ IKSSISRSLH AIDEEKGLKQ PPGMSSL

Best Arabidopsis Sequence Match ( AT1G55535.1 )
(BLAST)

001: MMLCGSLRDR IHPWLRDYVK LQSLAVFLIY AQIGCALIGS LGALYNGVLL INLAIALFAL VAIESNSQSL GRTYAVLLFC ALLLDISWFI LFTEEIWSIS
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPEEM CLKQTGMASI

Arabidopsis Description

At1g55535 [Source:UniProtKB/TrEMBL;Acc:Q5XF13]
SUBAcon: [mitochondrion,endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.