CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, extracellular, vacuole

Predictor Summary:

plastid 1
extracellular 2
plasma membrane 3
endoplasmic reticulum 1
vacuole 2
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plasma membrane, vacuole
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH65384
KRH76164

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G55535.1	KRH65384	AT3G60600.1	21798944
AT1G55535.1	KRH76164	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG89467	Soybean	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	90.8	91.16
Bra037108.1-P	Field mustard	extracellular, mitochondrion, plasma membrane, vacuole	32.4	82.65
VIT_06s0004g00110.t01	Wine grape	mitochondrion	65.6	66.94
Solyc01g050070.2.1	Tomato	extracellular, plasma membrane, vacuole	57.6	65.45
CDY26095	Canola	extracellular, mitochondrion, plasma membrane, vacuole	64.4	65.18
CDY08251	Canola	extracellular, mitochondrion, plasma membrane, vacuole	65.2	64.17
Bra030853.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	65.6	63.08
CDY56020	Canola	extracellular, mitochondrion, plasma membrane, vacuole	64.4	62.89
AT1G55535.1	Thale cress	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	64.8	62.31
AT3G13420.3	Thale cress	mitochondrion	57.2	54.17
GSMUA_Achr4P02350_001	Banana	plasma membrane	52.8	53.44
Zm00001d005229_P001	Maize	plasma membrane	50.8	53.36
Zm00001d019194_P004	Maize	plasma membrane	52.8	52.59
EER96079	Sorghum	extracellular, mitochondrion, plasma membrane, plastid	52.4	52.19
TraesCS2B01G262900.1	Wheat	plasma membrane	52.4	51.98
TraesCS2D01G242700.1	Wheat	plasma membrane	52.0	51.59
CDY10553	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, vacuole	64.8	50.78
GSMUA_Achr4P10280_001	Banana	plasma membrane	58.0	48.01
CDY43992	Canola	mitochondrion, plasma membrane	56.8	47.65
Bra027437.1-P	Field mustard	mitochondrion, plasma membrane	56.8	47.65
Os07t0223700-00	Rice	plasma membrane	51.2	41.42
TraesCS2A01G244700.1	Wheat	plasma membrane	48.8	36.2

Protein Annotations

EMBL:ACUP02004695	EnsemblPlants:KRH50507	EnsemblPlantsGene:GLYMA_07G225000	EntrezGene:100795730	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	PANTHER:PTHR35471	ProteinID:KRH50507	ProteinID:KRH50507.1	TMHMM:TMhelix	UniParc:UPI00023387C1
UniProt:K7L3A8	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr7:-:40201859..40208322

Molecular Weight (calculated)

27727.3 Da

IEP (calculated)

4.669

GRAVY (calculated)

0.279

Length

250 amino acids

Sequence
(BLAST)

001: MMLCGSFCLN LRDRIQPWIR DYDRLQSFAV ILIYLQIGCA LIGSLGASYN GLSLINLAIA LFALVAIESS SQSLGRTYAF LLFCAILLDI SWFILFSNEI
101: WTISTKDYTA FFTFSVKLTL AMQIVGFTVR LSSSLLWIQI YRLGASYVDA ASRVADSDSR ISFLSPMAPA VVRQCSNSNE ILGGSIYDPS YYSSLFEDGQ
201: ENKYSSEMQN HGTTQNESTS SAEVSLKSTM GRSFQAADEE NGLIIKKEIV

Best Arabidopsis Sequence Match ( AT1G55535.1 )
(BLAST)

001: MMLCGSLRDR IHPWLRDYVK LQSLAVFLIY AQIGCALIGS LGALYNGVLL INLAIALFAL VAIESNSQSL GRTYAVLLFC ALLLDISWFI LFTEEIWSIS
101: AETYGTFFIF SVKLTMAMEM IGFFVRLSSS LLWFQIYRLG AAIVDTSLPR ETDSDLRNSF LNPPTPAIAR QCSGAEEILG GSIYDPAYYT SLFEESQTNI
201: NSPKATQVNH YSAGNNGSPS AAEASHIKSP IFRSLHSIDE EKGLKKPEEM CLKQTGMASI

Arabidopsis Description

At1g55535 [Source:UniProtKB/TrEMBL;Acc:Q5XF13]
SUBAcon: [mitochondrion,endoplasmic reticulum,vacuole,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.