Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- plastid 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| endoplasmic reticulum:
27224218
endoplasmic reticulum: 28499913 mitochondrion: 28499913 |
msms PMID:
28499913
doi
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH65384 | Soybean | cytosol | 97.51 | 97.51 |
| VIT_15s0048g00220.t01 | Wine grape | cytosol, nucleus, plasma membrane | 74.27 | 74.9 |
| Solyc01g090910.2.1 | Tomato | nucleus | 70.95 | 73.39 |
| AT2G45140.1 | Thale cress | cytosol | 72.61 | 73.22 |
| KRH28066 | Soybean | cytosol | 54.36 | 73.18 |
| Bra003313.1-P | Field mustard | cytosol | 67.22 | 72.65 |
| Bra040323.1-P | Field mustard | cytosol, golgi, plasma membrane | 71.37 | 71.97 |
| CDY37029 | Canola | cytosol, golgi, plasma membrane | 71.37 | 71.97 |
| CDY27392 | Canola | cytosol, golgi, plasma membrane | 71.37 | 71.97 |
| Solyc10g018350.1.1 | Tomato | cytosol | 70.54 | 71.43 |
| KRH04117 | Soybean | cytosol, nucleus, plasma membrane | 71.37 | 71.37 |
| KRH57391 | Soybean | endoplasmic reticulum, mitochondrion | 70.95 | 70.95 |
| CDX83400 | Canola | cytosol, nucleus, plasma membrane | 70.95 | 70.95 |
| CDX95631 | Canola | cytosol, golgi, plasma membrane | 70.54 | 70.54 |
| CDY56247 | Canola | cytosol | 69.71 | 70.0 |
| CDX89063 | Canola | cytosol, golgi, plasma membrane | 69.29 | 69.87 |
| CDY57247 | Canola | cytosol | 69.29 | 69.58 |
| CDY48365 | Canola | cytosol | 68.88 | 69.46 |
| Bra014481.1-P | Field mustard | cytosol, golgi, plasma membrane | 68.88 | 69.46 |
| CDX71796 | Canola | cytosol | 68.46 | 69.33 |
| Bra007547.1-P | Field mustard | cytosol | 68.46 | 69.33 |
| CDY41153 | Canola | cytosol | 68.05 | 68.91 |
| Bra003423.1-P | Field mustard | cytosol, golgi, plasma membrane | 68.05 | 68.33 |
| CDX67837 | Canola | cytosol, golgi, plasma membrane | 68.05 | 68.33 |
| KRH77373 | Soybean | endoplasmic reticulum | 65.98 | 65.98 |
| AT3G60600.1 | Thale cress | cytosol | 68.46 | 64.45 |
| GSMUA_Achr5P20880_001 | Banana | cytosol | 63.49 | 64.02 |
| AT2G23830.1 | Thale cress | cytosol | 39.42 | 63.76 |
| Zm00001d049553_P001 | Maize | plasma membrane | 63.49 | 62.7 |
| EES14570 | Sorghum | cytosol, nucleus, plasma membrane | 62.66 | 61.89 |
| Os08t0156700-01 | Rice | plasma membrane | 61.41 | 60.91 |
| GSMUA_Achr11P... | Banana | cytosol, nucleus, plasma membrane | 60.17 | 60.67 |
| TraesCS7D01G296400.1 | Wheat | cytosol | 60.58 | 60.08 |
| TraesCS7A01G300700.1 | Wheat | cytosol | 60.58 | 60.08 |
| PGSC0003DMT400066920 | Potato | cytosol | 66.39 | 59.93 |
| KXG31128 | Sorghum | cytosol | 53.94 | 57.78 |
| Os04t0534400-01 | Rice | cytosol | 59.75 | 57.6 |
| EES12559 | Sorghum | cytosol | 59.34 | 57.43 |
| Zm00001d017390_P001 | Maize | cytosol | 53.53 | 57.33 |
| GSMUA_Achr1P20280_001 | Banana | cytosol | 50.62 | 57.01 |
| Zm00001d051288_P001 | Maize | cytosol | 53.11 | 56.89 |
| PGSC0003DMT400055602 | Potato | cytosol, golgi, plasma membrane | 53.53 | 56.83 |
| TraesCS6D01G220300.1 | Wheat | cytosol | 53.11 | 56.14 |
| TraesCS6A01G237600.1 | Wheat | cytosol, golgi, plasma membrane | 53.11 | 56.14 |
| HORVU2Hr1G091830.4 | Barley | cytosol | 57.26 | 55.42 |
| TraesCS2B01G385700.2 | Wheat | cytosol | 57.26 | 55.42 |
| TraesCS2A01G368500.1 | Wheat | cytosol | 57.26 | 55.42 |
| HORVU6Hr1G060760.3 | Barley | cytosol, golgi, plasma membrane | 52.28 | 55.26 |
| TraesCS6B01G266100.1 | Wheat | cytosol, golgi, plasma membrane | 52.28 | 55.26 |
| Solyc06g034220.2.1 | Tomato | nucleus | 51.87 | 55.07 |
| TraesCS2D01G365300.2 | Wheat | cytosol | 56.43 | 54.62 |
| Bra035442.1-P | Field mustard | cytosol | 23.65 | 52.78 |
| PGSC0003DMT400076826 | Potato | cytosol | 12.86 | 51.67 |
| GSMUA_Achr8P11120_001 | Banana | cytosol | 58.92 | 50.71 |
| Os02t0643000-01 | Rice | plasma membrane | 53.53 | 49.81 |
| GSMUA_Achr11P... | Banana | cytosol | 41.08 | 49.5 |
| HORVU7Hr1G071270.2 | Barley | mitochondrion | 60.58 | 49.49 |
| KRH04206 | Soybean | cytosol | 43.57 | 47.3 |
| KRH57501 | Soybean | plasma membrane | 40.66 | 46.45 |
| Zm00001d025939_P003 | Maize | cytosol, golgi, plasma membrane | 57.26 | 46.31 |
| KRH28185 | Soybean | cytosol, golgi, nucleus | 41.91 | 46.12 |
| CDY44556 | Canola | cytosol, extracellular, plastid | 18.26 | 43.14 |
| KRH77304 | Soybean | plasma membrane, vacuole | 42.32 | 40.96 |
| KRH02189 | Soybean | cytosol | 46.89 | 38.31 |
| Zm00001d036342_P001 | Maize | cytosol | 39.42 | 38.0 |
| KRH50932 | Soybean | cytosol | 46.47 | 37.97 |
| KRH11275 | Soybean | cytosol | 40.66 | 35.25 |
| KRG92793 | Soybean | cytosol | 41.49 | 20.79 |
| KRH34006 | Soybean | cytosol | 43.15 | 19.62 |
Protein Annotations
| EntrezGene:100779655 | Gene3D:2.60.40.10 | MapMan:20.7.1 | EMBL:ACUP02000575 | ncoils:Coil | EnsemblPlantsGene:GLYMA_01G136000 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005783 | GO:GO:0005789 |
| GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR000535 | InterPro:IPR013783 | InterPro:Ig-like_fold | UniProt:K7K3P5 |
| EnsemblPlants:KRH76164 | ProteinID:KRH76164 | ProteinID:KRH76164.1 | InterPro:MSP_dom | PFAM:PF00635 | PIRSF:PIRSF019693 |
| PFscan:PS50202 | PANTHER:PTHR10809 | PANTHER:PTHR10809:SF94 | InterPro:PapD-like_sf | SUPFAM:SSF49354 | TMHMM:TMhelix |
| UniParc:UPI00023376DB | InterPro:VAP | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr1:+:45850740..45855164
Molecular Weight (calculated)
26803.9 Da
IEP (calculated)
7.504
GRAVY (calculated)
-0.480
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSGELLHIQ PQELQFPFEL RKQISCSLQL SNKTDNYVAF KVKTTNPKKY CVRPNTGVVM PRSTCDVIVT MQAQKEAPPD MQCKDKFLLQ SVVASPGATT
101: KDITPEMFNK ESGHDVEECK LRVVYVAPPQ PPSPVREGSD EDSSPRASVS ENGHSSAAEF TGASKAFNER AEHQDASFEA RAHISKVTEE RNSVVEQNRR
201: LQQELELLRR DASRSHGGVP FMYVVLVGII GLILGFLLKR T
101: KDITPEMFNK ESGHDVEECK LRVVYVAPPQ PPSPVREGSD EDSSPRASVS ENGHSSAAEF TGASKAFNER AEHQDASFEA RAHISKVTEE RNSVVEQNRR
201: LQQELELLRR DASRSHGGVP FMYVVLVGII GLILGFLLKR T
001: MSNELLTIDP VDLQFPFELK KQISCSLYLG NKTDNYVAFK VKTTNPKKYC VRPNTGVVHP RSSSEVLVTM QAQKEAPADL QCKDKFLLQC VVASPGATPK
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
101: DVTHEMFSKE AGHRVEETKL RVVYVAPPRP PSPVREGSEE GSSPRASVSD NGNASDFTAA PRFSADRVDA QDNSSEARAL VTKLTEEKNS AVQLNNRLQQ
201: ELDQLRRESK RSKSGGIPFM YVLLVGLIGL ILGYIMKRT
Arabidopsis Description
PVA12Vesicle-associated protein 1-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SHC8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.