CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08190
KRH11076
KRH21197
KRH28715
KRH33893
KRH42923
KRH42926
KRH45251
KRH59035
KRH59036
KRH68524
KRH69884
KRH76747

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51010.1	KRH08190	AT3G50910.1	21798944
AT5G51010.1	KRH28715	AT3G50910.1	21798944
AT5G51010.1	KRH69884	AT3G50910.1	21798944
AT5G51010.1	KRH76747	AT3G50910.1	21798944
AT5G51010.1	KRH11076	AT4G19030.1	21798944
AT5G51010.1	KRH21197	AT4G19030.1	21798944
AT5G51010.1	KRH42923	AT4G19030.1	21798944
AT5G51010.1	KRH42926	AT4G19030.1	21798944
AT5G51010.1	KRH45251	AT4G19030.1	21798944
AT5G51010.1	KRH59035	AT4G19030.1	21798944
AT5G51010.1	KRH59036	AT4G19030.1	21798944
AT5G51010.1	KRH33893	AT5G27690.1	21798944
AT5G51010.1	KRH68524	AT5G27690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63883	Soybean	plastid	88.89	77.58
KRH59722	Soybean	nucleus	60.42	56.49
KRH41049	Soybean	nucleus, plastid	59.72	54.78
VIT_17s0000g00110.t01	Wine grape	plastid	59.03	52.47
GSMUA_Achr10P...	Banana	plastid	59.03	50.3
Zm00001d007394_P001	Maize	plastid	49.31	48.3
EES09846	Sorghum	plastid	50.0	47.68
Os11t0528500-01	Rice	plastid	47.22	45.03
Solyc03g118130.2.1	Tomato	plastid	49.31	44.94
PGSC0003DMT400036930	Potato	plastid	48.61	43.75
TraesCS4A01G215500.1	Wheat	plastid	44.44	41.29
TraesCS4B01G100700.1	Wheat	plastid	43.06	40.52
TraesCS4D01G097300.1	Wheat	plastid	43.06	40.52
AT5G51010.1	Thale cress	plastid	43.06	40.26
CDY45796	Canola	plastid	44.44	39.51
CDX84893	Canola	plastid	41.67	38.22
Bra022748.1-P	Field mustard	plastid	41.67	38.22
GSMUA_Achr6P16380_001	Banana	vacuole	36.11	29.55
HORVU4Hr1G043650.2	Barley	plastid	42.36	24.21

Protein Annotations

EMBL:ACUP02003491	EnsemblPlants:KRH54078	EnsemblPlantsGene:GLYMA_06G163200	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
PANTHER:PTHR45299	ProteinID:KRH54078	ProteinID:KRH54078.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI000294985F
UniProt:K7KVF1	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:13480819..13481650

Molecular Weight (calculated)

15547.1 Da

IEP (calculated)

11.309

GRAVY (calculated)

-0.062

Length

144 amino acids

Sequence
(BLAST)

001: MAMHLQALTI SLNTARSPPP SLAPATNAGL RPHFNPLALK SSFFSGSLNL LLHPNQQLTS GAARISMRVA SKQAYICRDF CGAPKGRFRP YAPAVARNAN
101: DKDVRKARKS KIKKEEAIGN ALPIAAALGI AVLVGLYFYL NNKF

Best Arabidopsis Sequence Match ( AT5G51010.1 )
(BLAST)

001: MAMQLPPTTL YAGRSSVVLP PTTPTLQRSS FLPYYSMRLL GNKKSLSKSS APRFSMRVSS KQAYICRDCG YIYNDRTPFD KLPDNYFCPV CAAPKRRFRA
101: YMPDVSKNVN DKDVRKARKA ELQRDEAVGK ALPIGIAVGV LALAALYFYV NSTS

Arabidopsis Description

Rubredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FI47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.