Factsheet for PGSC0003DMT400036930

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
extracellular 1
plasma membrane 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009054
PGSC0003DMT400029504
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51010.1	PGSC0003DMT400009054	AT3G50910.1	21798944
AT5G51010.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT5G51010.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT5G51010.1	PGSC0003DMT400029504	AT5G27690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118130.2.1	Tomato	plastid	92.5	93.67
VIT_17s0000g00110.t01	Wine grape	plastid	67.5	66.67
KRH59722	Soybean	nucleus	59.38	61.69
EES09846	Sorghum	plastid	58.12	61.59
Zm00001d007394_P001	Maize	plastid	56.25	61.22
KRH41049	Soybean	nucleus, plastid	58.75	59.87
Os11t0528500-01	Rice	plastid	55.62	58.94
GSMUA_Achr10P...	Banana	plastid	61.25	57.99
AT5G51010.1	Thale cress	plastid	55.62	57.79
KRH63883	Soybean	plastid	56.88	55.15
Bra022748.1-P	Field mustard	plastid	53.75	54.78
CDX84893	Canola	plastid	53.75	54.78
TraesCS4B01G100700.1	Wheat	plastid	51.88	54.25
TraesCS4D01G097300.1	Wheat	plastid	51.88	54.25
TraesCS4A01G215500.1	Wheat	plastid	51.25	52.9
CDY45796	Canola	plastid	52.5	51.85
KRH54078	Soybean	plastid	43.75	48.61
HORVU4Hr1G043650.2	Barley	plastid	52.5	33.33
GSMUA_Achr6P16380_001	Banana	vacuole	31.88	28.98

Protein Annotations

EntrezGene:102605356	Gene3D:2.20.28.10	MapMan:35.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005506
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR024934	UniProt:M1B4I5	PFAM:PF00301
EnsemblPlantsGene:PGSC0003DMG400014238	PGSC:PGSC0003DMG400014238	EnsemblPlants:PGSC0003DMT400036930	PFscan:PS50903	PANTHER:PTHR45299	InterPro:Rubredoxin-like_dom
InterPro:Rubredoxin_dom	SUPFAM:SSF57802	TMHMM:TMhelix	UniParc:UPI0002956A0D	RefSeq:XP_006341467.1	SEG:seg

Description

Electron transporter [Source:PGSC_GENE;Acc:PGSC0003DMG400014238]

Coordinates

chr3:-:57705738..57708324

Molecular Weight (calculated)

17446.1 Da

IEP (calculated)

10.337

GRAVY (calculated)

-0.231

Length

160 amino acids

Sequence
(BLAST)

001: MALQVPTRIP ANLAPNGGNS GLRQAPNGLA LKSSFFSPSI HLLLPPPSFS RAAPATAPKI SMRVTSKQSY ICRDCGYIYN DRTPFEKVPD SYFCPVCGAP
101: KRRFRAYEPK VTKDANSTEV RKARKEQLKR DEAVGNVLPI AIGVGVVALA ALYFYVNNTS

Best Arabidopsis Sequence Match ( AT5G51010.1 )
(BLAST)

001: MAMQLPPTTL YAGRSSVVLP PTTPTLQRSS FLPYYSMRLL GNKKSLSKSS APRFSMRVSS KQAYICRDCG YIYNDRTPFD KLPDNYFCPV CAAPKRRFRA
101: YMPDVSKNVN DKDVRKARKA ELQRDEAVGK ALPIGIAVGV LALAALYFYV NSTS

Arabidopsis Description

Rubredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FI47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.