Factsheet for Os11t0528500-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
mitochondrion 5
plastid 3
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	extracellular
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	nucleus, plasma membrane, plastid
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	mitochondrion

nucleus: 19621931
plastid: 21433289

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

msms PMID: 19621931 doi

T Aki, S Yanagisawa

Department of Applied Biological Chemistry, The University of Tokyo, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0933200-00
Os02t0704600-01
Os03t0345700-01
Os05t0368600-01
Os07t0671400-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51010.1	Os02t0704600-01	AT3G50910.1	21798944
AT5G51010.1	Os01t0933200-00	AT5G27690.1	21798944
AT5G51010.1	Os03t0345700-01	AT5G27690.1	21798944
AT5G51010.1	Os05t0368600-01	AT5G27690.1	21798944
AT5G51010.1	Os07t0671400-01	AT5G27690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d007394_P001	Maize	plastid	69.54	71.43
EES09846	Sorghum	plastid	70.86	70.86
TraesCS4D01G097300.1	Wheat	plastid	70.2	69.28
TraesCS4B01G100700.1	Wheat	plastid	69.54	68.63
TraesCS4A01G215500.1	Wheat	plastid	69.54	67.74
Solyc03g118130.2.1	Tomato	plastid	60.93	58.23
VIT_17s0000g00110.t01	Wine grape	plastid	61.59	57.41
KRH59722	Soybean	nucleus	56.95	55.84
PGSC0003DMT400036930	Potato	plastid	58.94	55.62
KRH41049	Soybean	nucleus, plastid	57.62	55.41
AT5G51010.1	Thale cress	plastid	54.97	53.9
GSMUA_Achr10P...	Banana	plastid	60.26	53.85
Bra022748.1-P	Field mustard	plastid	54.97	52.87
CDX84893	Canola	plastid	54.97	52.87
KRH63883	Soybean	plastid	56.95	52.12
CDY45796	Canola	plastid	52.32	48.77
KRH54078	Soybean	plastid	45.03	47.22
HORVU4Hr1G043650.2	Barley	plastid	67.55	40.48
GSMUA_Achr6P16380_001	Banana	vacuole	32.45	27.84

Protein Annotations

Gene3D:2.20.28.10	MapMan:35.2	EntrezGene:4350631	ProteinID:ABA94031.1	EMBL:AK058434	ProteinID:BAF28367.1
ProteinID:BAT14264.1	ProteinID:EAZ18569.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005506	GO:GO:0005575
GO:GO:0016020	GO:GO:0016021	InterPro:IPR024934	EnsemblPlantsGene:Os11g0528500	EnsemblPlants:Os11t0528500-01	PFscan:PS50903
PANTHER:PTHR45299	UniProt:Q2R3B6	InterPro:Rubredoxin-like_dom	InterPro:Rubredoxin_dom	SUPFAM:SSF57802	TMHMM:TMhelix
UniParc:UPI0000682150	RefSeq:XP_015615806.1	SEG:seg	:	:	:

Description

Similar to Rubredoxin 1 (Rd-1). (Os11t0528500-01)

Coordinates

chr11:-:19180636..19182258

Molecular Weight (calculated)

16310.9 Da

IEP (calculated)

10.527

GRAVY (calculated)

-0.122

Length

151 amino acids

Sequence
(BLAST)

001: MAALQLQALR APAAAAAPLR SSSFCTPLSL PAPAPPRRGA RASTASARIT MRFGVASKQA YICRDCGYIY SDRTPFDKLP DKYFCPVCGA PKRRFKPYEP
101: KVAKNANATD ARKARKEQLK KDEAVGQALP IGIAVGILAL AGLFFYLNSV Y

Best Arabidopsis Sequence Match ( AT5G51010.1 )
(BLAST)

001: MAMQLPPTTL YAGRSSVVLP PTTPTLQRSS FLPYYSMRLL GNKKSLSKSS APRFSMRVSS KQAYICRDCG YIYNDRTPFD KLPDNYFCPV CAAPKRRFRA
101: YMPDVSKNVN DKDVRKARKA ELQRDEAVGK ALPIGIAVGV LALAALYFYV NSTS

Arabidopsis Description

Rubredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FI47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.