CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX73773
CDX77962
CDX78905
CDX90677
CDX98596
CDX99411
CDY01565
CDY05566
CDY25027
CDY28989
CDY67893

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G51010.1	CDX73773	AT3G50910.1	21798944
AT5G51010.1	CDX77962	AT3G50910.1	21798944
AT5G51010.1	CDX90677	AT3G50910.1	21798944
AT5G51010.1	CDY28989	AT3G50910.1	21798944
AT5G51010.1	CDY67893	AT3G50910.1	21798944
AT5G51010.1	CDX78905	AT4G19030.1	21798944
AT5G51010.1	CDX98596	AT4G19030.1	21798944
AT5G51010.1	CDX99411	AT4G19030.1	21798944
AT5G51010.1	CDY01565	AT4G19030.1	21798944
AT5G51010.1	CDY05566	AT5G27690.1	21798944
AT5G51010.1	CDY25027	AT5G27690.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX84893	Canola	plastid	81.48	84.08
AT5G51010.1	Thale cress	plastid	74.69	78.57
KRH59722	Soybean	nucleus	53.7	56.49
Zm00001d007394_P001	Maize	plastid	51.23	56.46
EES09846	Sorghum	plastid	52.47	56.29
Solyc03g118130.2.1	Tomato	plastid	53.7	55.06
KRH41049	Soybean	nucleus, plastid	53.09	54.78
VIT_17s0000g00110.t01	Wine grape	plastid	53.7	53.7
KRH63883	Soybean	plastid	53.7	52.73
PGSC0003DMT400036930	Potato	plastid	51.85	52.5
Os11t0528500-01	Rice	plastid	48.77	52.32
TraesCS4B01G100700.1	Wheat	plastid	48.77	51.63
TraesCS4D01G097300.1	Wheat	plastid	48.15	50.98
TraesCS4A01G215500.1	Wheat	plastid	48.15	50.32
GSMUA_Achr10P...	Banana	plastid	52.47	50.3
KRH54078	Soybean	plastid	39.51	44.44
HORVU4Hr1G043650.2	Barley	plastid	50.0	32.14
GSMUA_Achr6P16380_001	Banana	vacuole	29.63	27.27

Protein Annotations

EnsemblPlants:CDY45796	EnsemblPlantsGene:GSBRNA2T00082727001	Gene3D:2.20.28.10	GO:A0A078I7E0	GO:GO:0003674	GO:GO:0005488
GO:GO:0005506	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:IPR024934	InterPro:Rubredoxin-like_dom
InterPro:Rubredoxin_dom	PANTHER:PTHR45299	PFscan:PS50903	ProteinID:CDY45796	ProteinID:CDY45796.1	SEG:seg
SUPFAM:SSF57802	TMHMM:TMhelix	UniParc:UPI0004EDF56B	UniProt:A0A078I7E0	MapMan:35.2	:

Description

BnaC03g16190DBnaC03g16190D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I7E0]

Coordinates

chrLK032637:-:29993..30960

Molecular Weight (calculated)

18034.7 Da

IEP (calculated)

10.206

GRAVY (calculated)

-0.291

Length

162 amino acids

Sequence
(BLAST)

001: MTTMYVTPAT LNAGKPSAVF SPVTSNLQRS SSFLPYYSLR ILDNNKTKSL SKSSLSSSAP RFSMRVSSKQ AYICRDCGYI YNDRTPFDKL PDNYFCPVCA
101: APKRRFRPYM PDVSKNVNDK DVRKARKAEL QRDEAIGKAL PIAIAVGVLA LAALYLYVNN TA

Best Arabidopsis Sequence Match ( AT5G51010.1 )
(BLAST)

001: MAMQLPPTTL YAGRSSVVLP PTTPTLQRSS FLPYYSMRLL GNKKSLSKSS APRFSMRVSS KQAYICRDCG YIYNDRTPFD KLPDNYFCPV CAAPKRRFRA
101: YMPDVSKNVN DKDVRKARKA ELQRDEAVGK ALPIGIAVGV LALAALYFYV NSTS

Arabidopsis Description

Rubredoxin-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9FI47]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.