Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77962 | Canola | nucleus, plastid | 73.04 | 60.72 |
| Bra036850.1-P | Field mustard | plastid | 70.14 | 58.31 |
| CDX73773 | Canola | cytosol | 68.12 | 57.04 |
| AT3G50910.1 | Thale cress | cytosol | 68.41 | 52.8 |
| CDX90677 | Canola | nucleus | 62.32 | 52.7 |
| CDY28989 | Canola | nucleus | 61.16 | 50.36 |
| CDY18608 | Canola | nucleus | 35.07 | 33.33 |
| KRH08190 | Soybean | nucleus | 38.26 | 30.28 |
| KRH76747 | Soybean | plastid | 37.68 | 29.82 |
| KRH28715 | Soybean | cytosol | 33.33 | 28.05 |
| VIT_04s0023g02110.t01 | Wine grape | endoplasmic reticulum | 40.29 | 27.91 |
| GSMUA_Achr2P22980_001 | Banana | cytosol, nucleus, peroxisome, plastid | 31.3 | 25.96 |
| GSMUA_Achr6P08980_001 | Banana | nucleus | 30.43 | 25.61 |
| Solyc02g085000.2.1 | Tomato | nucleus | 33.62 | 25.11 |
| GSMUA_Achr1P12060_001 | Banana | plastid | 28.12 | 24.62 |
| PGSC0003DMT400009054 | Potato | nucleus, plastid | 32.46 | 23.28 |
| Os02t0704600-01 | Rice | nucleus | 30.43 | 23.03 |
| TraesCS6A01G272000.1 | Wheat | nucleus | 30.14 | 23.01 |
| TraesCS6D01G252200.1 | Wheat | nucleus | 29.86 | 22.94 |
| TraesCS6B01G299600.1 | Wheat | nucleus | 29.86 | 22.49 |
| OQU85551 | Sorghum | cytosol, plastid | 29.28 | 22.3 |
| HORVU6Hr1G068770.1 | Barley | nucleus | 29.28 | 22.25 |
| Zm00001d017768_P006 | Maize | cytosol | 30.14 | 21.89 |
| OQU78405 | Sorghum | nucleus | 26.38 | 21.36 |
| Zm00001d051562_P001 | Maize | plastid | 27.25 | 21.32 |
| Zm00001d038964_P001 | Maize | nucleus | 25.51 | 20.71 |
| KRH69884 | Soybean | nucleus | 35.65 | 16.99 |
| Zm00001d020667_P001 | Maize | nucleus | 5.51 | 14.29 |
Protein Annotations
| EnsemblPlants:CDY67893 | EnsemblPlantsGene:GSBRNA2T00067634001 | GO:A0A078JK52 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| PANTHER:PTHR35490 | ProteinID:CDY67893 | ProteinID:CDY67893.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EBE3A3 |
| UniProt:A0A078JK52 | MapMan:35.2 | : | : | : | : |
Description
BnaC01g42400DBnaC01g42400D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JK52]
Coordinates
chrLK036627:-:4636..7011
Molecular Weight (calculated)
38099.1 Da
IEP (calculated)
4.699
GRAVY (calculated)
-0.671
Length
345 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTFSAISLD RMLEPGAAST SAEAVPSRRS YYAKPPISKQ EKGKETRPRM SPALYATPDA IPLPNSPSSF LPSPYIINHK SRGPHLLKSS SEANVASSQQ
101: KPLEDEAIAN GADVKASPRR KSTSFLFPIS EATEEDYSNF DFDGVVDGPV GNWSPLDWKI GNGKSELDNP AANDLEWENN LPEPVTAKAD KESKSEDLYD
201: PGESASFTSN TDAGEESSNR LATPVGEFYD AWEEEALEQM KIHWQRLREQ LAQVGVFVPI DPTISTNNSN ISEELCCQLE AARFVSDFLS RELARRERQK
301: RKKRQRWIWG LIAATITLGS AALAWSYIPA SRPSSSEASQ TLKDD
101: KPLEDEAIAN GADVKASPRR KSTSFLFPIS EATEEDYSNF DFDGVVDGPV GNWSPLDWKI GNGKSELDNP AANDLEWENN LPEPVTAKAD KESKSEDLYD
201: PGESASFTSN TDAGEESSNR LATPVGEFYD AWEEEALEQM KIHWQRLREQ LAQVGVFVPI DPTISTNNSN ISEELCCQLE AARFVSDFLS RELARRERQK
301: RKKRQRWIWG LIAATITLGS AALAWSYIPA SRPSSSEASQ TLKDD
001: MPTFSAIALD RMLEPGASTS VESVPSTTNL FYSKPPISKL EKGKGKLPNE RTVTRPLMSP ALYATPDAIP LPNSPSSFPP SPYIINHKSR GPPRLLKSSS
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
101: EANVVSSSHQ KTLEEETITA ETDVKVSPRR RSTSFSFPIT EVTEDDYSNG VHARTVGNYN FDGIVDGPVG NWSPLDGKSG NGKSELDNAA NGLERVNGLS
201: EPVPIKTDKE SESEDFYDPG ESASFTSNTD VEGDAGDESS QRLATPVGEF YDAWDELSTD SGMQSSVNNI ESELSEIRLS LLMEIEKRKQ TEEALEQMQI
301: HWQRLREQMA QVGLFVPIDP TASTNNMNLS EELRCQLEIA RFVSDSLGRG MAKAEVEMEM ESMLETKNFE ITRLSDRLHY YEAVNREMSQ RNQEAIEVAR
401: RERQKRKKRQ RWIWGSIAAT ITLGSAALAW SYIPAAKPSS EVSLKDE
Arabidopsis Description
AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.