CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72492	Canola	mitochondrion	37.85	96.46
CDX81955	Canola	mitochondrion	89.93	87.21
CDY31994	Canola	mitochondrion	89.24	86.82
CDY05720	Canola	mitochondrion	84.72	83.56
AT2G20060.1	Thale cress	mitochondrion, plastid	86.11	82.67
Solyc10g047150.1.1	Tomato	cytosol	16.67	75.0
Solyc12g088730.1.1	Tomato	endoplasmic reticulum	78.47	74.1
PGSC0003DMT400039845	Potato	mitochondrion	76.74	70.83
GSMUA_Achr7P19520_001	Banana	mitochondrion	70.14	68.94
KRH36504	Soybean	mitochondrion	73.96	68.71
VIT_10s0116g00180.t01	Wine grape	mitochondrion	75.0	68.57
Os11t0585700-01	Rice	mitochondrion	68.06	68.53
TraesCS6B01G099200.1	Wheat	mitochondrion	67.71	67.47
KRH11490	Soybean	mitochondrion	73.26	66.56
TraesCS6A01G074600.1	Wheat	mitochondrion	66.67	66.44
TraesCSU01G122900.1	Wheat	mitochondrion	66.67	66.44
TraesCS5B01G237900.1	Wheat	mitochondrion	66.32	66.32
HORVU6Hr1G013230.3	Barley	mitochondrion	66.67	66.21
TraesCS5D01G246400.1	Wheat	mitochondrion	65.62	65.4
OQU90810	Sorghum	mitochondrion	66.67	65.31
Zm00001d034509_P002	Maize	mitochondrion	65.28	64.16
EES10663	Sorghum	mitochondrion	66.32	57.36
TraesCS5A01G239300.1	Wheat	mitochondrion	64.24	57.28
Bra031109.1-P	Field mustard	mitochondrion	93.06	52.14
HORVU5Hr1G068590.3	Barley	plastid	63.89	51.83
GSMUA_Achr10P...	Banana	plastid	26.04	44.64
CDY10268	Canola	plastid	23.26	23.26
CDY06698	Canola	plastid	22.57	22.97

Protein Annotations

MapMan:17.7.1.1.5	Gene3D:3.40.1370.10	GO:A0A078FLM2	UniProt:A0A078FLM2	EnsemblPlants:CDY13887	ProteinID:CDY13887
ProteinID:CDY13887.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00078339001	InterPro:IPR023574	HAMAP:MF_01328_B
PFAM:PF00573	PANTHER:PTHR10746	PANTHER:PTHR10746:SF11	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e
SUPFAM:SSF52166	TIGRFAMs:TIGR03953	UniParc:UPI0004EEC20F	:	:	:

Description

BnaA09g43890DBnaA09g43890D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FLM2]

Coordinates

chrLK032038:-:804162..806153

Molecular Weight (calculated)

32095.2 Da

IEP (calculated)

10.808

GRAVY (calculated)

-0.339

Length

288 amino acids

Sequence
(BLAST)

001: MAAASISRRI VRTFGSFSVS GNGLTSLPCD LKCGISLVSN RKHSTSILTP DDNFPYDLLA KKKVITPDRT IGQYQDLVIP VTNFQNEDKG FMVLAGDVFD
101: VPIRKDIIHH VVRWQLAKRQ QGTHSTKTIS EVSGTGRKPW NQKGTGRARH GTLRGPQFRG GCVMHGPKPR SHAIKMNKQV RRLGLKIALS ARAAEGKLVV
201: FDDMALPTHK TKNIVNYYNQ MENTKKVLVV EGGPIDEKLK LATQNLHYVN ILPSIGLNVY SILLHDTLVM SRDAVNKITE RMHTPINR

Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)

001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR

Arabidopsis Description

50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.