Factsheet for PGSC0003DMT400039845

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g088730.1.1	Tomato	endoplasmic reticulum	84.29	86.23
CDY72492	Canola	mitochondrion	30.77	84.96
Solyc10g047150.1.1	Tomato	cytosol	16.35	79.69
CDY13887	Canola	mitochondrion	70.83	76.74
CDY31994	Canola	mitochondrion	71.47	75.34
CDY05720	Canola	mitochondrion	70.19	75.0
AT2G20060.1	Thale cress	mitochondrion, plastid	70.83	73.67
CDX81955	Canola	mitochondrion	68.27	71.72
VIT_10s0116g00180.t01	Wine grape	mitochondrion	71.47	70.79
KRH36504	Soybean	mitochondrion	69.87	70.32
Os11t0585700-01	Rice	mitochondrion	63.14	68.88
KRH11490	Soybean	mitochondrion	69.87	68.77
GSMUA_Achr7P19520_001	Banana	mitochondrion	64.1	68.26
OQU90810	Sorghum	mitochondrion	64.1	68.03
Zm00001d034509_P002	Maize	mitochondrion	63.14	67.24
TraesCS5B01G237900.1	Wheat	mitochondrion	61.54	66.67
HORVU6Hr1G013230.3	Barley	mitochondrion	61.86	66.55
TraesCS6A01G074600.1	Wheat	mitochondrion	61.22	66.09
TraesCS6B01G099200.1	Wheat	mitochondrion	61.22	66.09
TraesCSU01G122900.1	Wheat	mitochondrion	61.22	66.09
TraesCS5D01G246400.1	Wheat	mitochondrion	60.58	65.4
EES10663	Sorghum	mitochondrion	64.1	60.06
TraesCS5A01G239300.1	Wheat	mitochondrion	60.9	58.82
HORVU5Hr1G068590.3	Barley	plastid	60.26	52.96
GSMUA_Achr10P...	Banana	plastid	24.04	44.64
Bra031109.1-P	Field mustard	mitochondrion	68.91	41.83
PGSC0003DMT400018162	Potato	cytosol	22.76	20.29

Protein Annotations

EntrezGene:102580579	MapMan:17.7.1.1.5	Gene3D:3.40.1370.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023574
UniProt:M1B8V4	HAMAP:MF_01328_B	PFAM:PF00573	EnsemblPlantsGene:PGSC0003DMG400015407	PGSC:PGSC0003DMG400015407	EnsemblPlants:PGSC0003DMT400039845
PANTHER:PTHR10746	PANTHER:PTHR10746:SF11	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166
TIGRFAMs:TIGR03953	UniParc:UPI0002955C40	:	:	:	:

Description

50S ribosomal protein L4 [Source:PGSC_GENE;Acc:PGSC0003DMG400015407]

Coordinates

chr12:+:56544869..56551306

Molecular Weight (calculated)

34787.3 Da

IEP (calculated)

11.039

GRAVY (calculated)

-0.302

Length

312 amino acids

Sequence
(BLAST)

001: MALSISRRIL RSFTSLNSLR PLSASNVKAN ILGDGVSWVE SSVFRKDESL FLACRRYSTS LLTPDSSDGS FPSDLLSKKR VSIPEREIGL LQDLVIPVTN
101: FNNEDKGFMC LAGDVFDVPI RKDIIHRVVR WQLAKRQQGT HSTKTISEVS GTGRKPWNQK GTGRARHGTL RGPQFRGGAT MHGPKPRSHA IKLNKKVRRL
201: GLKIALSARA AEGKASNIPF HLLVFEDLEI PSHKTKNVVN YFNQLENTKK LLVVDGGPIS EKLKLATQNV HYVNVLPSIG LNVYSILLHD TLVMSRDAVN
301: KIVERMHTPI NR

Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)

001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR

Arabidopsis Description

50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.