Factsheet for Solyc10g047150.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0585700-01	Rice	mitochondrion	76.56	17.13
Solyc12g088730.1.1	Tomato	endoplasmic reticulum	79.69	16.72
CDY13887	Canola	mitochondrion	75.0	16.67
PGSC0003DMT400039845	Potato	mitochondrion	79.69	16.35
OQU90810	Sorghum	mitochondrion	75.0	16.33
CDX81955	Canola	mitochondrion	75.0	16.16
CDY05720	Canola	mitochondrion	73.44	16.1
TraesCS5B01G237900.1	Wheat	mitochondrion	71.88	15.97
TraesCSU01G122900.1	Wheat	mitochondrion	71.88	15.92
TraesCS6B01G099200.1	Wheat	mitochondrion	71.88	15.92
TraesCS6A01G074600.1	Wheat	mitochondrion	71.88	15.92
TraesCS5D01G246400.1	Wheat	mitochondrion	71.88	15.92
CDY31994	Canola	mitochondrion	73.44	15.88
HORVU6Hr1G013230.3	Barley	mitochondrion	71.88	15.86
GSMUA_Achr7P19520_001	Banana	mitochondrion	71.88	15.7
Zm00001d034509_P002	Maize	mitochondrion	71.88	15.7
AT2G20060.1	Thale cress	mitochondrion, plastid	73.44	15.67
VIT_10s0116g00180.t01	Wine grape	mitochondrion	76.56	15.56
KRH36504	Soybean	mitochondrion	75.0	15.48
KRH11490	Soybean	mitochondrion	75.0	15.14
EES10663	Sorghum	mitochondrion	75.0	14.41
TraesCS5A01G239300.1	Wheat	mitochondrion	71.88	14.24
HORVU5Hr1G068590.3	Barley	plastid	71.88	12.96
GSMUA_Achr10P...	Banana	plastid	26.56	10.12
Bra031109.1-P	Field mustard	mitochondrion	75.0	9.34
Solyc07g061900.2.1	Tomato	plastid	39.06	8.68
CDY72492	Canola	mitochondrion	4.69	2.65

Protein Annotations

Gene3D:3.40.1370.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022626	InterPro:IPR023574	UniProt:K4CZX9	PFAM:PF00573
PANTHER:PTHR10746	PANTHER:PTHR10746:SF11	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166
EnsemblPlantsGene:Solyc10g047150.1	EnsemblPlants:Solyc10g047150.1.1	UniParc:UPI0002769BD0	:	:	:

Description

No Description!

Coordinates

chr10:-:39920937..39922641

Molecular Weight (calculated)

7121.8 Da

IEP (calculated)

12.265

GRAVY (calculated)

-0.758

Length

64 amino acids

Sequence
(BLAST)

1: MGKFQGTHST KTISEVSRTG RIPWNQMGIR RARHGTLCGP QFRGGATMYG PKPQSHVIKL NKKV

Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)

001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR

Arabidopsis Description

50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.