CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05720	Canola	mitochondrion	99.11	38.36
CDY31994	Canola	mitochondrion	100.0	38.18
CDY13887	Canola	mitochondrion	96.46	37.85
CDX81955	Canola	mitochondrion	96.46	36.7
AT2G20060.1	Thale cress	mitochondrion, plastid	97.35	36.67
Solyc12g088730.1.1	Tomato	endoplasmic reticulum	85.84	31.8
GSMUA_Achr7P19520_001	Banana	mitochondrion	82.3	31.74
KRH36504	Soybean	mitochondrion	86.73	31.61
Os11t0585700-01	Rice	mitochondrion	78.76	31.12
PGSC0003DMT400039845	Potato	mitochondrion	84.96	30.77
KRH11490	Soybean	mitochondrion	85.84	30.6
VIT_10s0116g00180.t01	Wine grape	mitochondrion	84.96	30.48
OQU90810	Sorghum	mitochondrion	77.88	29.93
TraesCS5B01G237900.1	Wheat	mitochondrion	76.11	29.86
TraesCS6B01G099200.1	Wheat	mitochondrion	75.22	29.41
Zm00001d034509_P002	Maize	mitochondrion	76.11	29.35
TraesCSU01G122900.1	Wheat	mitochondrion	74.34	29.07
TraesCS6A01G074600.1	Wheat	mitochondrion	74.34	29.07
HORVU6Hr1G013230.3	Barley	mitochondrion	74.34	28.97
TraesCS5D01G246400.1	Wheat	mitochondrion	73.45	28.72
EES10663	Sorghum	mitochondrion	78.76	26.73
TraesCS5A01G239300.1	Wheat	mitochondrion	74.34	26.01
HORVU5Hr1G068590.3	Barley	plastid	72.57	23.1
CDY10268	Canola	plastid	22.12	8.68
CDY06698	Canola	plastid	21.24	8.48
Solyc10g047150.1.1	Tomato	cytosol	2.65	4.69
GSMUA_Achr10P...	Banana	plastid	0.0	0.0

Protein Annotations

Gene3D:3.40.1370.10	MapMan:35.2	GO:A0A078K3L3	UniProt:A0A078K3L3	EnsemblPlants:CDY72492	ProteinID:CDY72492
ProteinID:CDY72492.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00030164001	InterPro:IPR023574	PFAM:PF00573
PANTHER:PTHR10746	PANTHER:PTHR10746:SF11	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166
UniParc:UPI0004EF15B8	:	:	:	:	:

Description

BnaCnng77920DBnaCnng77920D protein [Source:UniProtKB/TrEMBL;Acc:A0A078K3L3]

Coordinates

chrLK051389:-:1242..2033

Molecular Weight (calculated)

12803.9 Da

IEP (calculated)

10.319

GRAVY (calculated)

-0.126

Length

113 amino acids

Sequence
(BLAST)

001: MNKQVRRLGL KIALTARAAE GKLLVFDDLA LPTHKTKNIV NYYNQMENTK KVLVVEGGPI DEKLKLATQN LHYVNILPSI GLNVYSILLH DTLVMSRDAV
101: NKIVERMHTP INR

Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)

001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR

Arabidopsis Description

50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.