CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015574.1-P	Field mustard	plastid	92.01	93.64
CDY06698	Canola	plastid	92.01	93.64
AT1G07320.1	Thale cress	plastid	83.68	85.46
VIT_06s0004g06140.t01	Wine grape	plastid	63.19	62.76
GSMUA_Achr8P02340_001	Banana	plastid	57.99	59.43
KRH48823	Soybean	plastid	61.46	58.42
Solyc07g061900.2.1	Tomato	plastid	57.99	57.99
KRH66493	Soybean	endoplasmic reticulum, nucleus, plastid	61.81	57.42
EER95130	Sorghum	plastid	58.68	56.9
KRH38064	Soybean	plastid	31.6	55.15
Os03t0265400-01	Rice	plastid	57.64	51.39
KRH62346	Soybean	plastid	35.76	51.24
TraesCS4B01G213600.1	Wheat	golgi, plastid	55.9	50.47
HORVU4Hr1G060970.4	Barley	plastid	55.9	50.47
TraesCS4D01G214300.1	Wheat	plastid	55.56	50.16
TraesCS4A01G091100.1	Wheat	plastid	55.56	50.0
PGSC0003DMT400018162	Potato	cytosol	53.47	44.0
CDY13887	Canola	mitochondrion	23.26	23.26
CDX81955	Canola	mitochondrion	23.61	22.9
CDY31994	Canola	mitochondrion	22.92	22.3
CDY05720	Canola	mitochondrion	22.57	22.26
CDY72492	Canola	mitochondrion	8.68	22.12

Protein Annotations

MapMan:17.7.2.1.4	Gene3D:3.40.1370.10	GO:A0A078FDV7	UniProt:A0A078FDV7	EnsemblPlants:CDY10268	ProteinID:CDY10268
ProteinID:CDY10268.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00032096001	InterPro:IPR023574	HAMAP:MF_01328_B
PFAM:PF00573	PANTHER:PTHR10746	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166
TIGRFAMs:TIGR03953	UniParc:UPI0004EF3489	SEG:seg	:	:	:

Description

BnaC05g05110DBnaC05g05110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FDV7]

Coordinates

chrLK032001:+:844554..845750

Molecular Weight (calculated)

31253.0 Da

IEP (calculated)

9.792

GRAVY (calculated)

-0.438

Length

288 amino acids

Sequence
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHQIPRNY ISVAKPSSGR VSKPLSVAAQ LATLPIFSFE GERVGETYLD LKTAPEDTAR AVVHRAIVND LQNKRRGTAS
101: TLTRGEVRGG GIKPYAQKKT GNARRGSQRT PLRPGGGVVF GPKPRDWTIK INRKEKRLAI STAISSAASS EGGAIVVEEF GDRFGKPKTK DFLAAMKRWG
201: LDPKEKAMFL MIDVEENVAK SGRNIGTLRM LTPRTLNLFD ILNSDKLVLT PAAVEFLNAR YGVESFETDE EDEDDTEGAE EAADEQGA

Best Arabidopsis Sequence Match ( AT1G07320.2 )
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHQIPKTY ISVSKLGSGR VSKPLSVSSQ LATLPILSFE GEKVGETYLD LKAAPEDTAR AVVHRAIVTD LNNKRRGTAS
101: TLTRGEVRGG GIKPYSQKKT GHARRGSQRT PLRPGGGVVF GPRPKDWSIK INRKEKKLAI STALSSAASA EGGAIVVEEF GEKFEKPKTK DFLAAMQRWG
201: LDPKEKAMFL MIDVDENVAK SSRNIGTLRM LTPRTLNLFD ILNADKLVLT PAAVEFLNAR YGVDAVEEED DDEDETEEEA

Arabidopsis Description

RPL4RPL4 [Source:UniProtKB/TrEMBL;Acc:A0A178WQG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.