Factsheet for Os03t0265400-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER95130	Sorghum	plastid	74.3	80.81
TraesCS4B01G213600.1	Wheat	golgi, plastid	76.16	77.12
TraesCS4A01G091100.1	Wheat	plastid	73.06	73.75
TraesCS4D01G214300.1	Wheat	plastid	72.76	73.67
HORVU4Hr1G060970.4	Barley	plastid	66.56	67.4
GSMUA_Achr8P02340_001	Banana	plastid	54.18	62.28
AT1G07320.1	Thale cress	plastid	53.56	61.35
Bra015574.1-P	Field mustard	plastid	51.7	59.01
CDY06698	Canola	plastid	51.7	59.01
KRH48823	Soybean	plastid	55.11	58.75
KRH66493	Soybean	endoplasmic reticulum, nucleus, plastid	56.04	58.39
CDY10268	Canola	plastid	51.39	57.64
VIT_06s0004g06140.t01	Wine grape	plastid	50.15	55.86
KRH38064	Soybean	plastid	28.48	55.76
Solyc07g061900.2.1	Tomato	plastid	48.92	54.86
KRH62346	Soybean	plastid	32.82	52.74
Bra029156.1-P	Field mustard	cytosol, endoplasmic reticulum	14.86	42.86
PGSC0003DMT400018162	Potato	cytosol	44.89	41.43
Os11t0585700-01	Rice	mitochondrion	21.98	24.83

Protein Annotations

MapMan:17.7.2.1.4	Gene3D:3.40.1370.10	EntrezGene:4332348	ProteinID:ABF95133.1	EMBL:AK061468	EMBL:AK104116
EMBL:AK104424	ProteinID:BAF11562.1	ProteinID:BAS83402.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0008266	GO:GO:0009058	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0022626
InterPro:IPR023574	HAMAP:MF_01328_B	EnsemblPlantsGene:Os03g0265400	EnsemblPlants:Os03t0265400-01	PFAM:PF00573	PANTHER:PTHR10746
UniProt:Q10NM5	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166	TIGRFAMs:TIGR03953
UniParc:UPI0000DB4CFF	RefSeq:XP_015628628.1	SEG:seg	:	:	:

Description

Similar to 50S ribosomal protein L4, chloroplast precursor (R-protein L4). (Os03t0265400-01);Similar to 50S ribosomal protein L4, chloroplast precursor (R-protein L4). (Os03t0265400-02)

Coordinates

chr3:+:8753551..8756010

Molecular Weight (calculated)

34522.5 Da

IEP (calculated)

6.163

GRAVY (calculated)

-0.370

Length

323 amino acids

Sequence
(BLAST)

001: MAASSVASTL LLSLSSSSSP FLSPTSVSFL PSAAAAASSS PRVAVAAGKQ KAAISVLRAL RAEAATLPVL SFTGEKVGEV ALDLKSAPPS TARAVVHRAI
101: ITDRQNKRRG TASTLTRGEV RGGGRKPYQQ KKTGKARRGS MRTPLRPGGG VIFGPKPRDW SIKINRKEKR LAISTALASA AVADDAFVVE EFDEEFAAGP
201: KTRDFVAALQ RWGLDPKEKA MFFATDFADN VRLSGRNIGS LKMLTPRTLN LYDILDARKL FFTPAAINYL NSRYGATVFD EYEDDTNGED DGEEEAEELQ
301: EGEGSAEEAA QDEAAETEAD SNS

Best Arabidopsis Sequence Match ( AT1G07320.2 )
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHQIPKTY ISVSKLGSGR VSKPLSVSSQ LATLPILSFE GEKVGETYLD LKAAPEDTAR AVVHRAIVTD LNNKRRGTAS
101: TLTRGEVRGG GIKPYSQKKT GHARRGSQRT PLRPGGGVVF GPRPKDWSIK INRKEKKLAI STALSSAASA EGGAIVVEEF GEKFEKPKTK DFLAAMQRWG
201: LDPKEKAMFL MIDVDENVAK SSRNIGTLRM LTPRTLNLFD ILNADKLVLT PAAVEFLNAR YGVDAVEEED DDEDETEEEA

Arabidopsis Description

RPL4RPL4 [Source:UniProtKB/TrEMBL;Acc:A0A178WQG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.