Factsheet for PGSC0003DMT400018162

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g061900.2.1	Tomato	plastid	66.0	80.21
GSMUA_Achr8P02340_001	Banana	plastid	46.57	58.01
VIT_06s0004g06140.t01	Wine grape	plastid	47.14	56.9
AT1G07320.1	Thale cress	plastid	45.14	56.03
Bra015574.1-P	Field mustard	plastid	43.71	54.06
CDY06698	Canola	plastid	43.71	54.06
CDY10268	Canola	plastid	44.0	53.47
KRH48823	Soybean	plastid	45.71	52.81
KRH38064	Soybean	plastid	24.86	52.73
KRH66493	Soybean	endoplasmic reticulum, nucleus, plastid	46.57	52.58
EER95130	Sorghum	plastid	42.29	49.83
HORVU4Hr1G060970.4	Barley	plastid	42.0	46.08
KRH62346	Soybean	plastid	26.0	45.27
TraesCS4B01G213600.1	Wheat	golgi, plastid	41.14	45.14
Os03t0265400-01	Rice	plastid	41.43	44.89
TraesCS4D01G214300.1	Wheat	plastid	40.57	44.51
TraesCS4A01G091100.1	Wheat	plastid	40.29	44.06
Bra029156.1-P	Field mustard	cytosol, endoplasmic reticulum	10.57	33.04
PGSC0003DMT400039845	Potato	mitochondrion	20.29	22.76

Protein Annotations

MapMan:17.7.2.1.4	Gene3D:3.40.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0008266	GO:GO:0009058	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0022626	InterPro:IPR023574
UniProt:M1AA49	HAMAP:MF_01328_B	PFAM:PF00573	EnsemblPlantsGene:PGSC0003DMG400007051	PGSC:PGSC0003DMG400007051	EnsemblPlants:PGSC0003DMT400018162
PANTHER:PTHR10746	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166	TIGRFAMs:TIGR03953
UniParc:UPI0002950DAA	SEG:seg	:	:	:	:

Description

50S ribosomal protein L4, chloroplastic [Source:PGSC_GENE;Acc:PGSC0003DMG400007051]

Coordinates

chr7:+:52115607..52120029

Molecular Weight (calculated)

39576.0 Da

IEP (calculated)

4.215

GRAVY (calculated)

-0.619

Length

350 amino acids

Sequence
(BLAST)

001: MSLTTYFTNE NLALSNIEHD VFMSFLEEPE FEASDEELLR SVIESLEVEN IAPSVKTNDS ILLEQMKLEE DSTNLSYNLD ELEYCWIDSD MDCSTPSDDD
101: VNIWFKDCYY DQNGVEDLTN FVGALGTTTL NLKSAPLDTA RAVVHRGLTT DLRNQRRGTA STLTRAQVRG GGIKPYPQKK TGRARRGSNR TPLRPGGGVV
201: FGPKPKDWSV KINKKEKRLA ISTALSSATQ NAIVVEEFDD KFEKPKTKEF IDLMRRWGLD PKEKSLFLMT EVSDNVILSS RNISTLKMLT PRTLNLFDIL
301: DSEKLVFTKS AVEFLNERYG NDDDDDDDWE VVDEEEEDGG EVEESAESSE

Best Arabidopsis Sequence Match ( AT1G07320.1 )
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHQIPKTY ISVSKLGSGR VSKPLSVSSQ LATLPILSFE GEKVGETYLD LKAAPEDTAR AVVHRAIVTD LNNKRRGTAS
101: TLTRGEVRGG GIKPYSQKKT GHARRGSQRT PLRPGGGVVF GPRPKDWSIK INRKEKKLAI STALSSAASA EGGAIVVEEF GEKFEKPKTK DFLAAMQRWG
201: LDPKEKAMFL MIDVDENVAK SSRNIGTLRM LTPRTLNLFD ILNADKLVLT PAAVEFLNAR YGVDAVEEED DDEDETEGSE EA

Arabidopsis Description

RPL4RPL4 [Source:UniProtKB/TrEMBL;Acc:A0A178WQG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.