CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, plastid, nucleus

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62346	Soybean	plastid	56.13	86.57
KRH48823	Soybean	plastid	83.87	85.81
KRH38064	Soybean	plastid	40.32	75.76
AT1G07320.1	Thale cress	plastid	58.71	64.54
CDY06698	Canola	plastid	58.71	64.31
VIT_06s0004g06140.t01	Wine grape	plastid	59.03	63.1
GSMUA_Achr8P02340_001	Banana	plastid	56.45	62.28
CDY10268	Canola	plastid	57.42	61.81
Solyc07g061900.2.1	Tomato	plastid	55.81	60.07
EER95130	Sorghum	plastid	57.1	59.6
TraesCS4B01G213600.1	Wheat	golgi, plastid	58.06	56.43
Os03t0265400-01	Rice	plastid	58.39	56.04
TraesCS4D01G214300.1	Wheat	plastid	57.1	55.49
TraesCS4A01G091100.1	Wheat	plastid	56.45	54.69
HORVU4Hr1G060970.4	Barley	plastid	55.16	53.6
PGSC0003DMT400018162	Potato	cytosol	52.58	46.57
Bra029156.1-P	Field mustard	cytosol, endoplasmic reticulum	15.81	43.75
KRH36504	Soybean	mitochondrion	24.52	24.52
KRH11490	Soybean	mitochondrion	23.87	23.34

Protein Annotations

EntrezGene:100790380	MapMan:17.7.2.1.4	Gene3D:3.40.1370.10	EMBL:ACUP02001977	EnsemblPlantsGene:GLYMA_03G110100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022626
UniProt:I1JMQ2	InterPro:IPR023574	EnsemblPlants:KRH66493	ProteinID:KRH66493	ProteinID:KRH66493.1	HAMAP:MF_01328_B
PFAM:PF00573	PANTHER:PTHR10746	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166
TIGRFAMs:TIGR03953	UniParc:UPI0002339903	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:31375235..31378303

Molecular Weight (calculated)

33859.7 Da

IEP (calculated)

7.082

GRAVY (calculated)

-0.590

Length

310 amino acids

Sequence
(BLAST)

001: MASLSLSLST PTTPTSLSFT SSSIFFSSHQ FHTHNNSFKS NSFPVLPSKK PLSISCKASP PLPVLNFSGE RVGESFLDLR SAPPDTARAV VHRAVVTDLQ
101: NKRRGTASTL TRGEVRGGGR KPFPQKKTGR ARRGSNRTPL RPGGGVIFGP KPRDWSIKIN RKEKRLAIST AVASAAASAV VVEDFAAEFA EKPKTKEFIA
201: AMKRWGLDPK EKAMFLMTEV PENVRLSSRN IGTLKMHTPR TLNLYDILDA DKLVLTQGAV DYLNQRYGGD YQGSDDEDEE EEEEGYEEGE EEGVVDGEEG
301: PDAGDSDVVN

Best Arabidopsis Sequence Match ( AT1G07320.1 )
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHQIPKTY ISVSKLGSGR VSKPLSVSSQ LATLPILSFE GEKVGETYLD LKAAPEDTAR AVVHRAIVTD LNNKRRGTAS
101: TLTRGEVRGG GIKPYSQKKT GHARRGSQRT PLRPGGGVVF GPRPKDWSIK INRKEKKLAI STALSSAASA EGGAIVVEEF GEKFEKPKTK DFLAAMQRWG
201: LDPKEKAMFL MIDVDENVAK SSRNIGTLRM LTPRTLNLFD ILNADKLVLT PAAVEFLNAR YGVDAVEEED DDEDETEGSE EA

Arabidopsis Description

RPL4RPL4 [Source:UniProtKB/TrEMBL;Acc:A0A178WQG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.