CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os03t0265400-01	Rice	plastid	80.81	74.3
TraesCS4B01G213600.1	Wheat	golgi, plastid	77.44	72.1
TraesCS4D01G214300.1	Wheat	plastid	72.39	67.4
TraesCS4A01G091100.1	Wheat	plastid	72.05	66.88
HORVU4Hr1G060970.4	Barley	plastid	71.04	66.14
GSMUA_Achr8P02340_001	Banana	plastid	59.6	62.99
AT1G07320.1	Thale cress	plastid	59.6	62.77
Bra015574.1-P	Field mustard	plastid	58.25	61.13
CDY06698	Canola	plastid	58.25	61.13
VIT_06s0004g06140.t01	Wine grape	plastid	58.25	59.66
CDY10268	Canola	plastid	56.9	58.68
KRH48823	Soybean	plastid	58.92	57.76
KRH66493	Soybean	endoplasmic reticulum, nucleus, plastid	59.6	57.1
Solyc07g061900.2.1	Tomato	plastid	53.87	55.56
KRH38064	Soybean	plastid	29.29	52.73
KRH62346	Soybean	plastid	33.33	49.25
PGSC0003DMT400018162	Potato	cytosol	49.83	42.29
Bra029156.1-P	Field mustard	cytosol, endoplasmic reticulum	14.14	37.5
OQU90810	Sorghum	mitochondrion	23.23	23.47
EES10663	Sorghum	mitochondrion	24.92	22.22

Protein Annotations

MapMan:17.7.2.1.4	Gene3D:3.40.1370.10	EntrezGene:8078804	UniProt:C5WQ51	EnsemblPlants:EER95130	ProteinID:EER95130
ProteinID:EER95130.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0008266
GO:GO:0009058	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579
GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0022626	InterPro:IPR023574	HAMAP:MF_01328_B
PFAM:PF00573	PANTHER:PTHR10746	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	EnsemblPlantsGene:SORBI_3001G427000
SUPFAM:SSF52166	unigene:Sbi.17912	TIGRFAMs:TIGR03953	UniParc:UPI0001A831AD	RefSeq:XP_002468132.1	SEG:seg

Description

hypothetical protein

Coordinates

chr1:-:70632570..70635434

Molecular Weight (calculated)

32000.7 Da

IEP (calculated)

9.713

GRAVY (calculated)

-0.379

Length

297 amino acids

Sequence
(BLAST)

001: MPGAAVASPL LLSLSSSSSP FLSSSSTSFL PPHSAAVRTK TAVSVLRALR AEAATLPVLS FTGEKVGEVT LDLKSAPPST ARAVVHRAII TDRQNARRGT
101: ASTLTRGEVR GGGKKPYQQK KTGKARRGSQ RTPLRPGGGV VFGPKPRDWS IKINRKEKRL AISTALASAA VAEDAFVVEE FDEAFASGPK TRDFVAALQR
201: WGLDPKQKAM FFATEFDDNV RLSGRNIGSL KMLTPRTLNL YDILDARKLF FTPAAVDYLN SRYGASASDD YYTDDEDDGE EELVEQEAEE GTTAEAA

Best Arabidopsis Sequence Match ( AT1G07320.2 )
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHQIPKTY ISVSKLGSGR VSKPLSVSSQ LATLPILSFE GEKVGETYLD LKAAPEDTAR AVVHRAIVTD LNNKRRGTAS
101: TLTRGEVRGG GIKPYSQKKT GHARRGSQRT PLRPGGGVVF GPRPKDWSIK INRKEKKLAI STALSSAASA EGGAIVVEEF GEKFEKPKTK DFLAAMQRWG
201: LDPKEKAMFL MIDVDENVAK SSRNIGTLRM LTPRTLNLFD ILNADKLVLT PAAVEFLNAR YGVDAVEEED DDEDETEEEA

Arabidopsis Description

RPL4RPL4 [Source:UniProtKB/TrEMBL;Acc:A0A178WQG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.