CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034509_P002	Maize	mitochondrion	81.68	92.83
OQU90810	Sorghum	mitochondrion	76.58	86.73
Os11t0585700-01	Rice	mitochondrion	74.17	86.36
HORVU6Hr1G013230.3	Barley	mitochondrion	71.47	82.07
TraesCSU01G122900.1	Wheat	mitochondrion	71.17	82.01
TraesCS6A01G074600.1	Wheat	mitochondrion	70.87	81.66
TraesCS6B01G099200.1	Wheat	mitochondrion	70.87	81.66
TraesCS5D01G246400.1	Wheat	mitochondrion	70.57	81.31
TraesCS5B01G237900.1	Wheat	mitochondrion	70.27	81.25
CDY72492	Canola	mitochondrion	26.73	78.76
Solyc10g047150.1.1	Tomato	cytosol	14.41	75.0
TraesCS5A01G239300.1	Wheat	mitochondrion	72.07	74.3
GSMUA_Achr7P19520_001	Banana	mitochondrion	63.06	71.67
CDY05720	Canola	mitochondrion	60.06	68.49
VIT_10s0116g00180.t01	Wine grape	mitochondrion	63.36	66.98
HORVU5Hr1G068590.3	Barley	plastid	71.17	66.76
CDY13887	Canola	mitochondrion	57.36	66.32
CDY31994	Canola	mitochondrion	58.56	65.88
Solyc12g088730.1.1	Tomato	endoplasmic reticulum	59.76	65.25
CDX81955	Canola	mitochondrion	57.96	64.98
KRH36504	Soybean	mitochondrion	60.36	64.84
PGSC0003DMT400039845	Potato	mitochondrion	60.06	64.1
AT2G20060.1	Thale cress	mitochondrion, plastid	57.66	64.0
KRH11490	Soybean	mitochondrion	60.36	63.41
GSMUA_Achr10P...	Banana	plastid	27.03	53.57
Bra031109.1-P	Field mustard	mitochondrion	56.46	36.58
EER95130	Sorghum	plastid	22.22	24.92

Protein Annotations

MapMan:17.7.1.1.5	Gene3D:3.40.1370.10	EntrezGene:8072011	UniProt:C5YEX6	EnsemblPlants:EES10663	ProteinID:EES10663
ProteinID:EES10663.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0022626	InterPro:IPR023574	HAMAP:MF_01328_B	PFAM:PF00573	PANTHER:PTHR10746
PANTHER:PTHR10746:SF11	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	EnsemblPlantsGene:SORBI_3006G056600	SUPFAM:SSF52166
unigene:Sbi.4443	TIGRFAMs:TIGR03953	UniParc:UPI0001A86AE0	RefSeq:XP_002446335.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr6:+:40063900..40069889

Molecular Weight (calculated)

36594.6 Da

IEP (calculated)

11.245

GRAVY (calculated)

-0.379

Length

333 amino acids

Sequence
(BLAST)

001: MLSLKLGKAP RRTSSLPPPQ PPRSAGATLA AACPFSAHPM RALARAASSL LRRAAGSAPT TGSPHHPSPG VGPCLAKNLP GFFFNGYSTL LAPPSEVLIP
101: PELLSSRTVW TPDRELGQYE DLVARVTNFH NEDKGFMVLD GDVFDVPIRK DIVHRVVRWQ LAKRQQGTHS TKTISEVSGT GRKPYKQKGT GRARHGTLRG
201: PQFRGGATMH GPKPRSHAIK LQKKVRRLGL KIALSARTAE GKLLVFEDLE VPSHKTKNIV QYIRQMDDTK KVLLVDGGDI DKKLKLATQN LHYVNVLPSI
301: GLNVYSILQH DTLVMSRAAI NRIVERMHTP INR

Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)

001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR

Arabidopsis Description

50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.