CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72492	Canola	mitochondrion	38.18	100.0
CDY05720	Canola	mitochondrion	89.53	90.75
CDY13887	Canola	mitochondrion	86.82	89.24
AT2G20060.1	Thale cress	mitochondrion, plastid	86.82	85.67
CDX81955	Canola	mitochondrion	84.8	84.51
Solyc10g047150.1.1	Tomato	cytosol	15.88	73.44
Solyc12g088730.1.1	Tomato	endoplasmic reticulum	74.32	72.13
PGSC0003DMT400039845	Potato	mitochondrion	75.34	71.47
VIT_10s0116g00180.t01	Wine grape	mitochondrion	75.34	70.79
Os11t0585700-01	Rice	mitochondrion	67.91	70.28
KRH36504	Soybean	mitochondrion	72.64	69.35
GSMUA_Achr7P19520_001	Banana	mitochondrion	67.57	68.26
TraesCS5B01G237900.1	Wheat	mitochondrion	66.22	68.06
TraesCS6A01G074600.1	Wheat	mitochondrion	66.22	67.82
TraesCS6B01G099200.1	Wheat	mitochondrion	66.22	67.82
OQU90810	Sorghum	mitochondrion	67.23	67.69
TraesCSU01G122900.1	Wheat	mitochondrion	65.88	67.47
HORVU6Hr1G013230.3	Barley	mitochondrion	65.88	67.24
KRH11490	Soybean	mitochondrion	71.96	67.19
TraesCS5D01G246400.1	Wheat	mitochondrion	65.54	67.13
Zm00001d034509_P002	Maize	mitochondrion	64.86	65.53
TraesCS5A01G239300.1	Wheat	mitochondrion	64.19	58.82
EES10663	Sorghum	mitochondrion	65.88	58.56
HORVU5Hr1G068590.3	Barley	plastid	63.51	52.96
GSMUA_Achr10P...	Banana	plastid	26.01	45.83
CDY10268	Canola	plastid	22.3	22.92
CDY06698	Canola	plastid	21.62	22.61

Protein Annotations

MapMan:17.7.1.1.5	Gene3D:3.40.1370.10	GO:A0A078H3K6	UniProt:A0A078H3K6	EnsemblPlants:CDY31994	ProteinID:CDY31994
ProteinID:CDY31994.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00050807001	InterPro:IPR023574	HAMAP:MF_01328_B
PFAM:PF00573	PANTHER:PTHR10746	PANTHER:PTHR10746:SF11	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e
SUPFAM:SSF52166	TIGRFAMs:TIGR03953	UniParc:UPI0004EEE720	:	:	:

Description

BnaA07g00010DBnaA07g00010D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3K6]

Coordinates

chrLK032283:-:454095..456010

Molecular Weight (calculated)

32910.1 Da

IEP (calculated)

11.044

GRAVY (calculated)

-0.341

Length

296 amino acids

Sequence
(BLAST)

001: MAASLSRRVL RTFGSFTALG RSNTTNAFGN GLSSLPSDLK CGMGLLSNRK LSTSILTPDD SFPRDLLSQK TVITPDRTIG QYQDLVIPVT NFQNEDKGFM
101: VLAGDVFDVP VRKDIIHHVV RWQLAKRQQG THSTKTISEV SGTGRKPWNQ KGTGRARHGT LRGPQFRGGC VMHGPRPRSH AIKMNKQVRR LGLKIALTAR
201: AAEGKLLVFD DLALPTHKTK NIVNYYNQME NTKKVLVVEG GPIDEKLKLA TQNLHYVNIL PSIGLNVYSI LLHDTLVMSR DAVNKIVERM HTPINR

Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)

001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR

Arabidopsis Description

50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.