CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G074600.1	Wheat	mitochondrion	85.37	86.85
TraesCSU01G122900.1	Wheat	mitochondrion	85.37	86.85
TraesCS6B01G099200.1	Wheat	mitochondrion	85.03	86.51
HORVU6Hr1G013230.3	Barley	mitochondrion	85.03	86.21
TraesCS5B01G237900.1	Wheat	mitochondrion	84.35	86.11
TraesCS5D01G246400.1	Wheat	mitochondrion	84.35	85.81
Os11t0585700-01	Rice	mitochondrion	82.99	85.31
CDY72492	Canola	mitochondrion	29.93	77.88
EES10663	Sorghum	mitochondrion	86.73	76.58
Solyc10g047150.1.1	Tomato	cytosol	16.33	75.0
TraesCS5A01G239300.1	Wheat	mitochondrion	80.95	73.68
GSMUA_Achr7P19520_001	Banana	mitochondrion	70.41	70.65
CDY05720	Canola	mitochondrion	67.01	67.47
CDY31994	Canola	mitochondrion	67.69	67.23
CDY13887	Canola	mitochondrion	65.31	66.67
HORVU5Hr1G068590.3	Barley	plastid	80.27	66.48
VIT_10s0116g00180.t01	Wine grape	mitochondrion	70.75	66.03
Solyc12g088730.1.1	Tomato	endoplasmic reticulum	68.03	65.57
CDX81955	Canola	mitochondrion	65.65	64.98
AT2G20060.1	Thale cress	mitochondrion, plastid	65.65	64.33
PGSC0003DMT400039845	Potato	mitochondrion	68.03	64.1
KRH36504	Soybean	mitochondrion	67.01	63.55
KRH11490	Soybean	mitochondrion	67.35	62.46
GSMUA_Achr10P...	Banana	plastid	27.89	48.81
Bra031109.1-P	Field mustard	mitochondrion	64.29	36.77
EER95130	Sorghum	plastid	23.47	23.23

Protein Annotations

MapMan:17.7.1.1.5	Gene3D:3.40.1370.10	EntrezGene:8061138	UniProt:A0A1Z5S4F1	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR023574	HAMAP:MF_01328_B	EnsemblPlants:OQU90810	ProteinID:OQU90810	ProteinID:OQU90810.1	PFAM:PF00573
PANTHER:PTHR10746	PANTHER:PTHR10746:SF11	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	EnsemblPlantsGene:SORBI_3001G050700
SUPFAM:SSF52166	TIGRFAMs:TIGR03953	UniParc:UPI0001A82093	RefSeq:XP_002463709.1	SEG:seg	:

Description

hypothetical protein

Coordinates

chr1:+:3727805..3731439

Molecular Weight (calculated)

32823.1 Da

IEP (calculated)

11.140

GRAVY (calculated)

-0.385

Length

294 amino acids

Sequence
(BLAST)

001: MRALARAASL LRRAAGSAPT TVALHHNHLP RGVGPCLAKN PGFFFNGYST LLAPPSEVLI PPELLSSRTV WTPDRELGQY EDLVARVTNF HNEDKGFMVL
101: DGDVFDVPIR KDIVHRVVRW QLAKRQQGTH STKTISEVSG TGRKPYKQKG TGRARHGTLR GPQFRGGATM HGPKPRSHAI KLQKKVRRLG LKIALSARTA
201: EGKLLVFEDL EVPSHKTKNI VQYIRQMDDT KKVLLVDGGD IDKKLKLATQ NLHYVNVLPS IGLNVYSILQ HDTLVMTRAA INRIVERMHT PINR

Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)

001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR

Arabidopsis Description

50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.