Factsheet for HORVU5Hr1G068590.3

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
TargetP:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G237900.1	Wheat	mitochondrion	69.3	85.42
TraesCS5D01G246400.1	Wheat	mitochondrion	69.3	85.12
HORVU6Hr1G013230.3	Barley	mitochondrion	69.3	84.83
Os11t0585700-01	Rice	mitochondrion	66.48	82.52
OQU90810	Sorghum	mitochondrion	66.48	80.27
Zm00001d034509_P002	Maize	mitochondrion	65.63	79.52
TraesCS5A01G239300.1	Wheat	mitochondrion	70.42	77.4
CDY72492	Canola	mitochondrion	23.1	72.57
Solyc10g047150.1.1	Tomato	cytosol	12.96	71.88
EES10663	Sorghum	mitochondrion	66.76	71.17
GSMUA_Achr7P19520_001	Banana	mitochondrion	56.9	68.94
VIT_10s0116g00180.t01	Wine grape	mitochondrion	57.75	65.08
CDY05720	Canola	mitochondrion	52.96	64.38
CDY13887	Canola	mitochondrion	51.83	63.89
CDY31994	Canola	mitochondrion	52.96	63.51
AT2G20060.1	Thale cress	mitochondrion, plastid	52.39	62.0
Solyc12g088730.1.1	Tomato	endoplasmic reticulum	52.96	61.64
KRH36504	Soybean	mitochondrion	53.52	61.29
CDX81955	Canola	mitochondrion	51.27	61.28
KRH11490	Soybean	mitochondrion	54.37	60.88
PGSC0003DMT400039845	Potato	mitochondrion	52.96	60.26
GSMUA_Achr10P...	Banana	plastid	23.66	50.0
Bra031109.1-P	Field mustard	mitochondrion	50.99	35.21
HORVU4Hr1G060970.4	Barley	plastid	18.03	20.06

Protein Annotations

MapMan:17.7.1.1.5	Gene3D:3.40.1370.10	UniProt:A0A287RMS9	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU5Hr1G068590
EnsemblPlants:HORVU5Hr1G068590.3	InterPro:IPR023574	HAMAP:MF_01328_B	PFAM:PF00573	PANTHER:PTHR10746	PANTHER:PTHR10746:SF11
InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166	TIGRFAMs:TIGR03953	UniParc:UPI000B4821EF
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr5H:-:518931792..518937258

Molecular Weight (calculated)

39220.2 Da

IEP (calculated)

10.445

GRAVY (calculated)

-0.469

Length

355 amino acids

Sequence
(BLAST)

001: PPHTSPPPDG SGGHHRCGGR RHCWESLSAS SHVHQISHRC IQVQTCPRRC HHLSGDFQGA PACLRASSAL GAWTTRTGLQ SSSAAVAGVG SGVPVMEGQI
101: WPNVCSNGYS TLLAPANEAL IPPELLSSKT VWTPDRELGQ YEDLVARVTN FHNEDNGFMV LDGDVFDVPI RKDIVHRVVR WQLAKRQQGT HSTKTISEVS
201: GTGRKPYKQK GTGRARHGTL RGCQFRGGAT MHGPKPRSHA FKLQKKVRRL GLKIALSART AERKLCIFED LEVPSHKTKN IVQHIKQMDD TKKVLLVDGG
301: DIDKKLKLAT QNLHYVNVIP SIGLNVYSIL QHDTLIMTRD AINRIVERMH TPISR

Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)

001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR

Arabidopsis Description

50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.