CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72492	Canola	mitochondrion	38.36	99.11
CDY31994	Canola	mitochondrion	90.75	89.53
AT2G20060.1	Thale cress	mitochondrion, plastid	88.01	85.67
CDY13887	Canola	mitochondrion	83.56	84.72
CDX81955	Canola	mitochondrion	81.85	80.47
Solyc10g047150.1.1	Tomato	cytosol	16.1	73.44
Solyc12g088730.1.1	Tomato	endoplasmic reticulum	73.97	70.82
VIT_10s0116g00180.t01	Wine grape	mitochondrion	76.03	70.48
Os11t0585700-01	Rice	mitochondrion	68.84	70.28
PGSC0003DMT400039845	Potato	mitochondrion	75.0	70.19
KRH36504	Soybean	mitochondrion	74.32	70.0
KRH11490	Soybean	mitochondrion	73.63	67.82
TraesCS6A01G074600.1	Wheat	mitochondrion	66.78	67.47
TraesCS6B01G099200.1	Wheat	mitochondrion	66.78	67.47
TraesCS5B01G237900.1	Wheat	mitochondrion	66.44	67.36
GSMUA_Achr7P19520_001	Banana	mitochondrion	67.47	67.24
TraesCSU01G122900.1	Wheat	mitochondrion	66.44	67.13
OQU90810	Sorghum	mitochondrion	67.47	67.01
HORVU6Hr1G013230.3	Barley	mitochondrion	66.44	66.9
TraesCS5D01G246400.1	Wheat	mitochondrion	65.75	66.44
Zm00001d034509_P002	Maize	mitochondrion	66.44	66.21
EES10663	Sorghum	mitochondrion	68.49	60.06
TraesCS5A01G239300.1	Wheat	mitochondrion	65.07	58.82
HORVU5Hr1G068590.3	Barley	plastid	64.38	52.96
GSMUA_Achr10P...	Banana	plastid	26.71	46.43
CDY10268	Canola	plastid	22.26	22.57
CDY06698	Canola	plastid	21.58	22.26

Protein Annotations

MapMan:17.7.1.1.5	Gene3D:3.40.1370.10	GO:A0A078EUJ8	EnsemblPlants:CDY05720	ProteinID:CDY05720	ProteinID:CDY05720.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00120752001	InterPro:IPR023574	HAMAP:MF_01328_B	PFAM:PF00573
PANTHER:PTHR10746	PANTHER:PTHR10746:SF11	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166
TIGRFAMs:TIGR03953	UniParc:UPI0004EE7F75	:	:	:	:

Description

BnaC07g00830D

Coordinates

chrLK031964:+:223458..225692

Molecular Weight (calculated)

32425.5 Da

IEP (calculated)

10.874

GRAVY (calculated)

-0.353

Length

292 amino acids

Sequence
(BLAST)

001: MAASLSKRVL RTFGSFTALG RSNATNASGN GYSDLKCGMG LLSNRKLSTS ILTPDDSFPH DLLSQKTVIT PDRTIGQYQD LVIPVTNFQN EDKGFMVLAG
101: DVFDVPVRKD IIHHVVRWQL AKRQQGTHST KTISEVSGTG RKPWNQKGTG RARHGTLRGP QFRGGCVMHG PRPRSHAIKM NKQVRRLGLK IALTARAAEG
201: KLLVFDDLAL PTHKTKNIVN YYNQMETTKK VLVVEGGPID EKLKLATQNL HYVNILPSIG LNVYSILLHD TLVMSRDAVN KIVERMHTPI NR

Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)

001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR

Arabidopsis Description

50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.