Factsheet for VIT_10s0116g00180.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72492	Canola	mitochondrion	30.48	84.96
Solyc10g047150.1.1	Tomato	cytosol	15.56	76.56
CDY05720	Canola	mitochondrion	70.48	76.03
CDY31994	Canola	mitochondrion	70.79	75.34
CDY13887	Canola	mitochondrion	68.57	75.0
AT2G20060.1	Thale cress	mitochondrion, plastid	70.79	74.33
Os11t0585700-01	Rice	mitochondrion	66.67	73.43
CDX81955	Canola	mitochondrion	68.89	73.06
Solyc12g088730.1.1	Tomato	endoplasmic reticulum	70.16	72.46
HORVU6Hr1G013230.3	Barley	mitochondrion	66.67	72.41
TraesCS6B01G099200.1	Wheat	mitochondrion	66.35	72.32
TraesCSU01G122900.1	Wheat	mitochondrion	65.71	71.63
TraesCS6A01G074600.1	Wheat	mitochondrion	65.71	71.63
TraesCS5B01G237900.1	Wheat	mitochondrion	65.4	71.53
PGSC0003DMT400039845	Potato	mitochondrion	70.79	71.47
GSMUA_Achr7P19520_001	Banana	mitochondrion	66.03	70.99
OQU90810	Sorghum	mitochondrion	66.03	70.75
Zm00001d034509_P002	Maize	mitochondrion	65.71	70.65
TraesCS5D01G246400.1	Wheat	mitochondrion	64.76	70.59
KRH36504	Soybean	mitochondrion	67.94	69.03
KRH11490	Soybean	mitochondrion	68.57	68.14
EES10663	Sorghum	mitochondrion	66.98	63.36
TraesCS5A01G239300.1	Wheat	mitochondrion	64.44	62.85
HORVU5Hr1G068590.3	Barley	plastid	65.08	57.75
GSMUA_Achr10P...	Banana	plastid	26.03	48.81
Bra031109.1-P	Field mustard	mitochondrion	67.3	41.25
VIT_06s0004g06140.t01	Wine grape	plastid	21.9	23.79

Protein Annotations

EntrezGene:100265870	wikigene:100265870	MapMan:17.7.1.1.5	Gene3D:3.40.1370.10	EMBL:AM426541	ProteinID:CAN77922
ProteinID:CAN77922.1	ProteinID:CBI32995	ProteinID:CBI32995.3	UniProt:D7TR72	EMBL:FN596012	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022626
InterPro:IPR023574	EntrezGene:LOC100265870	wikigene:LOC100265870	HAMAP:MF_01328_B	PFAM:PF00573	PANTHER:PTHR10746
PANTHER:PTHR10746:SF11	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166	TIGRFAMs:TIGR03953
UniParc:UPI0001BE3BBC	ArrayExpress:VIT_10s0116g00180	EnsemblPlantsGene:VIT_10s0116g00180	EnsemblPlants:VIT_10s0116g00180.t01	RefSeq:XP_003634850	RefSeq:XP_003634850.1
RefSeq:XP_010645348.1	RefSeq:XP_010645350.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr10_random:-:84013..89598

Molecular Weight (calculated)

34907.7 Da

IEP (calculated)

10.948

GRAVY (calculated)

-0.259

Length

315 amino acids

Sequence
(BLAST)

001: MAVSISRRLL RTFGPSRVFG HCNSPMIMCP LFRTSDALCG LVSQDGLFST DSSCKTGSSF LSSRSLSTTT ILTPESSGVA FPPELLSTKT VLTPERTPGH
101: YQDLVIPVTN FHNEDKGFMV LAGDVFDVPI RKDIVHRVVR WQLAKRQQGT HSTKTISEVS GTGRKPWRQK GTGRARHGTL RGPQFRGGAI MHGPKPRSHA
201: IKLNKKVRRL GLKIALSART AEGKLLVFDD LEVPSHKTKN IVNYVKEMEN TKKLLLVDGG PITEKLKLAT QNLHYVNVLP SIGLNVYSIL LHDTLVMSRD
301: AVNKIVERMH TPINR

Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)

001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR

Arabidopsis Description

50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.