Factsheet for Solyc12g088730.1.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 4
mitochondrion 7

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 29145071

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72492	Canola	mitochondrion	31.8	85.84
PGSC0003DMT400039845	Potato	mitochondrion	86.23	84.29
Solyc10g047150.1.1	Tomato	cytosol	16.72	79.69
CDY13887	Canola	mitochondrion	74.1	78.47
CDY31994	Canola	mitochondrion	72.13	74.32
CDY05720	Canola	mitochondrion	70.82	73.97
AT2G20060.1	Thale cress	mitochondrion, plastid	72.13	73.33
CDX81955	Canola	mitochondrion	70.16	72.05
KRH36504	Soybean	mitochondrion	71.48	70.32
VIT_10s0116g00180.t01	Wine grape	mitochondrion	72.46	70.16
Os11t0585700-01	Rice	mitochondrion	65.57	69.93
KRH11490	Soybean	mitochondrion	71.48	68.77
OQU90810	Sorghum	mitochondrion	65.57	68.03
GSMUA_Achr7P19520_001	Banana	mitochondrion	64.92	67.58
TraesCS5B01G237900.1	Wheat	mitochondrion	63.61	67.36
TraesCS6A01G074600.1	Wheat	mitochondrion	63.61	67.13
HORVU6Hr1G013230.3	Barley	mitochondrion	63.61	66.9
TraesCSU01G122900.1	Wheat	mitochondrion	63.28	66.78
Zm00001d034509_P002	Maize	mitochondrion	63.93	66.55
TraesCS5D01G246400.1	Wheat	mitochondrion	62.95	66.44
TraesCS6B01G099200.1	Wheat	mitochondrion	62.95	66.44
EES10663	Sorghum	mitochondrion	65.25	59.76
TraesCS5A01G239300.1	Wheat	mitochondrion	61.64	58.2
HORVU5Hr1G068590.3	Barley	plastid	61.64	52.96
GSMUA_Achr10P...	Banana	plastid	24.59	44.64
Bra031109.1-P	Field mustard	mitochondrion	71.15	42.22
Solyc07g061900.2.1	Tomato	plastid	21.64	22.92

Protein Annotations

MapMan:17.7.1.1.5	Gene3D:3.40.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	GO:GO:0022626	InterPro:IPR023574	UniProt:K4DGU4	HAMAP:MF_01328_B
PFAM:PF00573	PANTHER:PTHR10746	PANTHER:PTHR10746:SF11	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e
SUPFAM:SSF52166	EnsemblPlantsGene:Solyc12g088730.1	EnsemblPlants:Solyc12g088730.1.1	TIGRFAMs:TIGR03953	UniParc:UPI0002769458	:

Description

No Description!

Coordinates

chr12:+:63982540..63988258

Molecular Weight (calculated)

33933.2 Da

IEP (calculated)

10.973

GRAVY (calculated)

-0.313

Length

305 amino acids

Sequence
(BLAST)

001: MALSISRRIL RSFASLNSLR TLSASNVKAN ILGDGVSCVE SSAFRKDESL FLACRRYSTS LLTPDSSDGS FPSDLLSKKR VSTPEREIGL LQDLVIPVTN
101: FNNEDKGFMC LAGDVFDVPI RKDIIHRVVR WQLAKRQQGT HSTKTISEVS GTGRKPWNQK GTGRARHGTL RGPQFRGGAT MHGPKPRSHA IKLNKKVRRL
201: GLKIALSARA AEGKLLVFED LEIPTHKTKN IVNYFNQLEN TKKLLVVDGG PISEKLKFAT QNVHYVNVLP SIGLNVYSIL LHDTLVMSRD AVNKIVERMH
301: TPINR

Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)

001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR

Arabidopsis Description

50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.