Factsheet for TraesCS5B01G237900.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

mitochondrion 5
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G246400.1	Wheat	mitochondrion	97.57	97.23
TraesCS6B01G099200.1	Wheat	mitochondrion	93.75	93.43
OQU90810	Sorghum	mitochondrion	86.11	84.35
Os11t0585700-01	Rice	mitochondrion	81.6	82.17
Zm00001d034509_P002	Maize	mitochondrion	80.9	79.52
TraesCS5A01G239300.1	Wheat	mitochondrion	87.85	78.33
CDY72492	Canola	mitochondrion	29.86	76.11
Solyc10g047150.1.1	Tomato	cytosol	15.97	71.88
EES10663	Sorghum	mitochondrion	81.25	70.27
GSMUA_Achr7P19520_001	Banana	mitochondrion	71.18	69.97
HORVU5Hr1G068590.3	Barley	plastid	85.42	69.3
CDY05720	Canola	mitochondrion	67.36	66.44
CDY13887	Canola	mitochondrion	66.32	66.32
CDY31994	Canola	mitochondrion	68.06	66.22
VIT_10s0116g00180.t01	Wine grape	mitochondrion	71.53	65.4
CDX81955	Canola	mitochondrion	66.67	64.65
AT2G20060.1	Thale cress	mitochondrion, plastid	66.67	64.0
Solyc12g088730.1.1	Tomato	endoplasmic reticulum	67.36	63.61
PGSC0003DMT400039845	Potato	mitochondrion	66.67	61.54
KRH36504	Soybean	mitochondrion	65.62	60.97
KRH11490	Soybean	mitochondrion	65.97	59.94
GSMUA_Achr10P...	Banana	plastid	27.78	47.62
Bra031109.1-P	Field mustard	mitochondrion	65.62	36.77
TraesCS4B01G213600.1	Wheat	golgi, plastid	23.26	21.0

Protein Annotations

MapMan:17.7.1.1.5	Gene3D:3.40.1370.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023574	HAMAP:MF_01328_B
PFAM:PF00573	PANTHER:PTHR10746	PANTHER:PTHR10746:SF11	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e
SUPFAM:SSF52166	SignalP:SignalP-noTM	TIGRFAMs:TIGR03953	EnsemblPlantsGene:TraesCS5B01G237900	EnsemblPlants:TraesCS5B01G237900.1	SEG:seg

Description

No Description!

Coordinates

chr5B:-:418811456..418814836

Molecular Weight (calculated)

32000.2 Da

IEP (calculated)

10.510

GRAVY (calculated)

-0.311

Length

288 amino acids

Sequence
(BLAST)

001: MHALACAASL LRRAMASLPQ LGAIGCDTPL LAKILPNVYS KGYSTLLAPA NEALIPPELL SSKTVWTPDR ELGQYEDLVA RVTNFHNEDN GFMVLDGDVF
101: DVPIRKDIVH RVVRQLAKRQ QGTHSTKTIS EVSGTGRKPY KQKGTGRARH GTLRGCQFRG GATMHGPKPR SHAFKLQKKV RRLGLKIALS ARTAEGKLCI
201: FEDLEVPSHK TKNIVQYIKQ MDDTKKVLLV DGGDIDKKLK LATQNLHYVN VIPSIGLNVY SILQHDTLVM TRDAVNRIVE RMHTPISR

Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)

001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR

Arabidopsis Description

50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.