Factsheet for TraesCS4B01G213600.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi, plastid

Predictor Summary:

plastid 7
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G214300.1	Wheat	plastid	87.15	87.15
TraesCS4A01G091100.1	Wheat	plastid	86.52	86.25
EER95130	Sorghum	plastid	72.1	77.44
Os03t0265400-01	Rice	plastid	77.12	76.16
HORVU4Hr1G060970.4	Barley	plastid	74.92	74.92
AT1G07320.1	Thale cress	plastid	52.35	59.22
KRH66493	Soybean	endoplasmic reticulum, nucleus, plastid	56.43	58.06
GSMUA_Achr8P02340_001	Banana	plastid	50.78	57.65
KRH48823	Soybean	plastid	54.55	57.43
Bra015574.1-P	Field mustard	plastid	50.16	56.54
CDY06698	Canola	plastid	50.16	56.54
CDY10268	Canola	plastid	50.47	55.9
VIT_06s0004g06140.t01	Wine grape	plastid	49.84	54.83
KRH38064	Soybean	plastid	26.96	52.12
Solyc07g061900.2.1	Tomato	plastid	45.77	50.69
KRH62346	Soybean	plastid	31.66	50.25
PGSC0003DMT400018162	Potato	cytosol	45.14	41.14
Bra029156.1-P	Field mustard	cytosol, endoplasmic reticulum	13.17	37.5
TraesCS5B01G237900.1	Wheat	mitochondrion	21.0	23.26
TraesCS6B01G099200.1	Wheat	mitochondrion	20.69	22.84

Protein Annotations

MapMan:17.7.2.1.4	Gene3D:3.40.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0008266	GO:GO:0009058	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0022626	InterPro:IPR023574
HAMAP:MF_01328_B	PFAM:PF00573	PANTHER:PTHR10746	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e
SUPFAM:SSF52166	TIGRFAMs:TIGR03953	EnsemblPlantsGene:TraesCS4B01G213600	EnsemblPlants:TraesCS4B01G213600.1	SEG:seg	:

Description

No Description!

Coordinates

chr4B:-:452720650..452723349

Molecular Weight (calculated)

34469.2 Da

IEP (calculated)

5.557

GRAVY (calculated)

-0.502

Length

319 amino acids

Sequence
(BLAST)

001: MPVSSVASPL LLSLSASSSS FLSSPSSVSF LPSPSSSSFP HASVRGRPSA SILRALRAEA TTLPVINFTG EKVGEVALDI KAAPPSTARA VVHRALITDR
101: QNARRGTAST LTRGEVRGGG RKPYGQKKTG KARRGSVRTP LRPGGGVIFG PKPRDWTIKI NRKEKRLAIS TALASAAVAN DSFVVQEFDE EFATGPRTRD
201: FVAALQRWGL DPREKAMFFS TELDNNVRLS GRNIGTLKML TPRTLNLYDI LDARKHFFTP AAIDYLNSRY GTTGFDEYEG DDGEDDGEEE GVEEQEEGEE
301: ITEEAAQDET GEAEADSTS

Best Arabidopsis Sequence Match ( AT1G07320.1 )
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHQIPKTY ISVSKLGSGR VSKPLSVSSQ LATLPILSFE GEKVGETYLD LKAAPEDTAR AVVHRAIVTD LNNKRRGTAS
101: TLTRGEVRGG GIKPYSQKKT GHARRGSQRT PLRPGGGVVF GPRPKDWSIK INRKEKKLAI STALSSAASA EGGAIVVEEF GEKFEKPKTK DFLAAMQRWG
201: LDPKEKAMFL MIDVDENVAK SSRNIGTLRM LTPRTLNLFD ILNADKLVLT PAAVEFLNAR YGVDAVEEED DDEDETEGSE EA

Arabidopsis Description

RPL4RPL4 [Source:UniProtKB/TrEMBL;Acc:A0A178WQG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.