CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62346	Soybean	plastid	69.7	57.21
KRH66493	Soybean	endoplasmic reticulum, nucleus, plastid	75.76	40.32
KRH48823	Soybean	plastid	67.27	36.63
VIT_06s0004g06140.t01	Wine grape	plastid	58.79	33.45
CDY06698	Canola	plastid	56.36	32.86
Solyc07g061900.2.1	Tomato	plastid	56.36	32.29
AT1G07320.1	Thale cress	plastid	55.15	32.27
GSMUA_Achr8P02340_001	Banana	plastid	53.94	31.67
CDY10268	Canola	plastid	55.15	31.6
EER95130	Sorghum	plastid	52.73	29.29
Os03t0265400-01	Rice	plastid	55.76	28.48
HORVU4Hr1G060970.4	Barley	plastid	52.73	27.27
TraesCS4D01G214300.1	Wheat	plastid	52.73	27.27
TraesCS4A01G091100.1	Wheat	plastid	52.73	27.19
TraesCS4B01G213600.1	Wheat	golgi, plastid	52.12	26.96
PGSC0003DMT400018162	Potato	cytosol	52.73	24.86
Bra029156.1-P	Field mustard	cytosol, endoplasmic reticulum	16.36	24.11
KRH36504	Soybean	mitochondrion	30.91	16.45
KRH11490	Soybean	mitochondrion	30.91	16.09

Protein Annotations

Gene3D:3.40.1370.10	MapMan:35.1	EMBL:ACUP02005603	EnsemblPlantsGene:GLYMA_09G108400	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022626	InterPro:IPR023574
UniProt:K7LD43	EnsemblPlants:KRH38064	ProteinID:KRH38064	ProteinID:KRH38064.1	PFAM:PF00573	PANTHER:PTHR10746
InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166	UniParc:UPI0002969DA6	SEG:seg

Description

hypothetical protein

Coordinates

chr9:+:21007957..21008454

Molecular Weight (calculated)

18104.6 Da

IEP (calculated)

11.178

GRAVY (calculated)

-0.627

Length

165 amino acids

Sequence
(BLAST)

001: MASLSLSLST PTTATSLSFT SSCIFFSSHQ FHTHNNSPRH NKKMSSNKCR GTDLQNKHRG TASTLTRSEV RGGGRKPFPQ KKTGRAYRGS NRTPLRPGGG
101: VTFGPKPCDW SIKINRKEKR LAISTAVASA AASAVVVEDF VAEFAEKPKT KEFIAAMKLL QEREY

Best Arabidopsis Sequence Match ( AT1G07320.2 )
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHQIPKTY ISVSKLGSGR VSKPLSVSSQ LATLPILSFE GEKVGETYLD LKAAPEDTAR AVVHRAIVTD LNNKRRGTAS
101: TLTRGEVRGG GIKPYSQKKT GHARRGSQRT PLRPGGGVVF GPRPKDWSIK INRKEKKLAI STALSSAASA EGGAIVVEEF GEKFEKPKTK DFLAAMQRWG
201: LDPKEKAMFL MIDVDENVAK SSRNIGTLRM LTPRTLNLFD ILNADKLVLT PAAVEFLNAR YGVDAVEEED DDEDETEEEA

Arabidopsis Description

RPL4RPL4 [Source:UniProtKB/TrEMBL;Acc:A0A178WQG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.