CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66493	Soybean	endoplasmic reticulum, nucleus, plastid	85.81	83.87
KRH62346	Soybean	plastid	48.18	72.64
KRH38064	Soybean	plastid	36.63	67.27
VIT_06s0004g06140.t01	Wine grape	plastid	61.72	64.48
CDY06698	Canola	plastid	59.74	63.96
AT1G07320.1	Thale cress	plastid	59.08	63.48
CDY10268	Canola	plastid	58.42	61.46
GSMUA_Achr8P02340_001	Banana	plastid	56.11	60.5
Solyc07g061900.2.1	Tomato	plastid	57.1	60.07
EER95130	Sorghum	plastid	57.76	58.92
Os03t0265400-01	Rice	plastid	58.75	55.11
TraesCS4B01G213600.1	Wheat	golgi, plastid	57.43	54.55
HORVU4Hr1G060970.4	Barley	plastid	55.78	52.98
TraesCS4D01G214300.1	Wheat	plastid	55.45	52.66
TraesCS4A01G091100.1	Wheat	plastid	54.79	51.88
PGSC0003DMT400018162	Potato	cytosol	52.81	45.71
Bra029156.1-P	Field mustard	cytosol, endoplasmic reticulum	15.51	41.96
KRH36504	Soybean	mitochondrion	24.75	24.19
KRH11490	Soybean	mitochondrion	24.09	23.03

Protein Annotations

EntrezGene:100803701	MapMan:17.7.2.1.4	Gene3D:3.40.1370.10	EMBL:ACUP02004289	EnsemblPlantsGene:GLYMA_07G114900	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022626
UniProt:I1KJJ8	InterPro:IPR023574	EnsemblPlants:KRH48823	ProteinID:KRH48823	ProteinID:KRH48823.1	ProteinID:KRH48824.1
HAMAP:MF_01328_B	PFAM:PF00573	PANTHER:PTHR10746	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e
SUPFAM:SSF52166	TIGRFAMs:TIGR03953	UniParc:UPI0002338A9C	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:+:12214164..12217666

Molecular Weight (calculated)

33228.1 Da

IEP (calculated)

8.416

GRAVY (calculated)

-0.623

Length

303 amino acids

Sequence
(BLAST)

001: MASLSLSTPT SLSFASSSIF FSSRQFHTFS SSKSNNKFPI LPSKKPLSIS CKASPPLPVL NFSGERVGES FLDLRSAPPD TARAVVHRAV VTDLQNKRRG
101: TASTLTRGEV RGGGRKPFPQ KKTGRARRGS NRTPLRPGGG VVFGPKPRDW SIKINRKEKR LAISTAVASA AASAVVVEDF ATEFAEKPKT KEFIAAMKRW
201: GLDPKEKAMF LMTEVPENVR LSSRNIGTLK MHTPRTLNLY DILDADKLVL TQGAVDYLNQ RYGGDYEGSD DEDEEEEEYE EGEEEGAVNG EEGPDEEDGN
301: VVN

Best Arabidopsis Sequence Match ( AT1G07320.2 )
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHQIPKTY ISVSKLGSGR VSKPLSVSSQ LATLPILSFE GEKVGETYLD LKAAPEDTAR AVVHRAIVTD LNNKRRGTAS
101: TLTRGEVRGG GIKPYSQKKT GHARRGSQRT PLRPGGGVVF GPRPKDWSIK INRKEKKLAI STALSSAASA EGGAIVVEEF GEKFEKPKTK DFLAAMQRWG
201: LDPKEKAMFL MIDVDENVAK SSRNIGTLRM LTPRTLNLFD ILNADKLVLT PAAVEFLNAR YGVDAVEEED DDEDETEEEA

Arabidopsis Description

RPL4RPL4 [Source:UniProtKB/TrEMBL;Acc:A0A178WQG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.