Factsheet for GSMUA_Achr8P02340_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g06140.t01	Wine grape	plastid	64.41	62.41
Solyc07g061900.2.1	Tomato	plastid	61.57	60.07
AT1G07320.1	Thale cress	plastid	60.14	59.93
EER95130	Sorghum	plastid	62.99	59.6
Bra015574.1-P	Field mustard	plastid	59.43	59.01
CDY06698	Canola	plastid	59.43	59.01
CDY10268	Canola	plastid	59.43	57.99
KRH66493	Soybean	endoplasmic reticulum, nucleus, plastid	62.28	56.45
KRH48823	Soybean	plastid	60.5	56.11
Os03t0265400-01	Rice	plastid	62.28	54.18
KRH38064	Soybean	plastid	31.67	53.94
HORVU4Hr1G060970.4	Barley	plastid	58.36	51.41
TraesCS4D01G214300.1	Wheat	plastid	58.01	51.1
TraesCS4B01G213600.1	Wheat	golgi, plastid	57.65	50.78
TraesCS4A01G091100.1	Wheat	plastid	57.65	50.62
KRH62346	Soybean	plastid	35.23	49.25
PGSC0003DMT400018162	Potato	cytosol	58.01	46.57
Bra029156.1-P	Field mustard	cytosol, endoplasmic reticulum	14.59	36.61
GSMUA_Achr7P19520_001	Banana	mitochondrion	24.56	23.55
GSMUA_Achr10P...	Banana	plastid	9.25	15.48

Protein Annotations

MapMan:17.7.2.1.4	Gene3D:3.40.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0008266	GO:GO:0009058	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0022626	EnsemblPlantsGene:GSMUA_Achr8G02340_001
EnsemblPlants:GSMUA_Achr8P02340_001	EnsemblPlants:GSMUA_Achr8T02340_001	InterPro:IPR023574	UniProt:M0TLY6	HAMAP:MF_01328_B	PFAM:PF00573
PANTHER:PTHR10746	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166	TIGRFAMs:TIGR03953
UniParc:UPI0002957019	SEG:seg	:	:	:	:

Description

ribosomal protein L4, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G02340_001]

Coordinates

chr8:+:1722484..1725350

Molecular Weight (calculated)

30359.3 Da

IEP (calculated)

9.708

GRAVY (calculated)

-0.318

Length

281 amino acids

Sequence
(BLAST)

001: MRISCATTPS LSSSFVASPL FLPNSHSFAN VSLAKAPSAV RLRVRCELAA IPVLSFSGEK VGDVPLDLKS APSDTARAVV HRGLVAEQQN QRRGTASTLT
101: RGEVRGGGKK PYPQKKTGGA RRGSQRTPLR PGGGVVFGPK PRDWSVKINR KEKRLALSTA LASAASAADA LVVEDFGQEF EAGPKTKEFV AAMRRWGLDP
201: KRKAMFLLTE VSDNVLLSCR NIGTIKLLTP RTLNLFDILD SEKLVFTKSA VEYLNSMYGE NAEEEGDGEE EEEEIVLAGD N

Best Arabidopsis Sequence Match ( AT1G07320.2 )
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHQIPKTY ISVSKLGSGR VSKPLSVSSQ LATLPILSFE GEKVGETYLD LKAAPEDTAR AVVHRAIVTD LNNKRRGTAS
101: TLTRGEVRGG GIKPYSQKKT GHARRGSQRT PLRPGGGVVF GPRPKDWSIK INRKEKKLAI STALSSAASA EGGAIVVEEF GEKFEKPKTK DFLAAMQRWG
201: LDPKEKAMFL MIDVDENVAK SSRNIGTLRM LTPRTLNLFD ILNADKLVLT PAAVEFLNAR YGVDAVEEED DDEDETEEEA

Arabidopsis Description

RPL4RPL4 [Source:UniProtKB/TrEMBL;Acc:A0A178WQG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.