Factsheet for Bra015574.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06698	Canola	plastid	100.0	100.0
CDY10268	Canola	plastid	93.64	92.01
AT1G07320.1	Thale cress	plastid	86.93	87.23
VIT_06s0004g06140.t01	Wine grape	plastid	64.66	63.1
GSMUA_Achr8P02340_001	Banana	plastid	59.01	59.43
EER95130	Sorghum	plastid	61.13	58.25
Solyc07g061900.2.1	Tomato	plastid	58.66	57.64
Os03t0265400-01	Rice	plastid	59.01	51.7
TraesCS4B01G213600.1	Wheat	golgi, plastid	56.54	50.16
HORVU4Hr1G060970.4	Barley	plastid	56.18	49.84
TraesCS4D01G214300.1	Wheat	plastid	55.83	49.53
TraesCS4A01G091100.1	Wheat	plastid	55.83	49.38
Bra029156.1-P	Field mustard	cytosol, endoplasmic reticulum	18.37	46.43
PGSC0003DMT400018162	Potato	cytosol	54.06	43.71
Bra031109.1-P	Field mustard	mitochondrion	23.67	13.04

Protein Annotations

MapMan:17.7.2.1.4	Gene3D:3.40.1370.10	EnsemblPlantsGene:Bra015574	EnsemblPlants:Bra015574.1	EnsemblPlants:Bra015574.1-P	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0008266	GO:GO:0009058	GO:GO:0009507
GO:GO:0009535	GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009987	GO:GO:0016020
GO:GO:0019538	GO:GO:0022626	InterPro:IPR023574	UniProt:M4DGF0	HAMAP:MF_01328_B	PFAM:PF00573
PANTHER:PTHR10746	PANTHER:PTHR10746:SF12	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166
TIGRFAMs:TIGR03953	UniParc:UPI0002544D84	SEG:seg	:	:	:

Description

AT1G07320 (E=3e-118) RPL4 | RPL4; poly(U) binding / structural constituent of ribosome

Coordinates

chrA10:-:949407..950368

Molecular Weight (calculated)

30701.6 Da

IEP (calculated)

10.039

GRAVY (calculated)

-0.410

Length

283 amino acids

Sequence
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHKIPKTY ISVAKPSSGR VSKPLSVAAQ LATLPIFSFE GERVGETYLD LKTAPEETAR AVVHRAIVND LQNKRRGTAS
101: TLTRGEVRGG GIKPYAQKKT GNARRGSQRT PLRPGGGVVF GPKPRDWSIK INRKEKRLAI STAISSAASS EGGAIVVEEF GDRFEKPKTK DFLAAMKRWG
201: LDPKEKAMFL MIDVEENVAK SGRNIGTLRM LTPRTLNLFD ILNSDKLVLT PAAVEFLNAR YGVDSEIGEE DEDDAEGAEE PAE

Best Arabidopsis Sequence Match ( AT1G07320.1 )
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHQIPKTY ISVSKLGSGR VSKPLSVSSQ LATLPILSFE GEKVGETYLD LKAAPEDTAR AVVHRAIVTD LNNKRRGTAS
101: TLTRGEVRGG GIKPYSQKKT GHARRGSQRT PLRPGGGVVF GPRPKDWSIK INRKEKKLAI STALSSAASA EGGAIVVEEF GEKFEKPKTK DFLAAMQRWG
201: LDPKEKAMFL MIDVDENVAK SSRNIGTLRM LTPRTLNLFD ILNADKLVLT PAAVEFLNAR YGVDAVEEED DDEDETEGSE EA

Arabidopsis Description

RPL4RPL4 [Source:UniProtKB/TrEMBL;Acc:A0A178WQG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.