Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 6
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY13887 | Canola | mitochondrion | 52.14 | 93.06 |
AT2G20060.1 | Thale cress | mitochondrion, plastid | 47.67 | 81.67 |
Solyc10g047150.1.1 | Tomato | cytosol | 9.34 | 75.0 |
Solyc12g088730.1.1 | Tomato | endoplasmic reticulum | 42.22 | 71.15 |
PGSC0003DMT400039845 | Potato | mitochondrion | 41.83 | 68.91 |
KRH36504 | Soybean | mitochondrion | 41.44 | 68.71 |
Os11t0585700-01 | Rice | mitochondrion | 37.74 | 67.83 |
VIT_10s0116g00180.t01 | Wine grape | mitochondrion | 41.25 | 67.3 |
GSMUA_Achr7P19520_001 | Banana | mitochondrion | 38.13 | 66.89 |
KRH11490 | Soybean | mitochondrion | 41.05 | 66.56 |
TraesCS6B01G099200.1 | Wheat | mitochondrion | 37.16 | 66.09 |
TraesCS6A01G074600.1 | Wheat | mitochondrion | 36.97 | 65.74 |
TraesCS5B01G237900.1 | Wheat | mitochondrion | 36.77 | 65.62 |
HORVU6Hr1G013230.3 | Barley | mitochondrion | 36.97 | 65.52 |
TraesCSU01G122900.1 | Wheat | mitochondrion | 36.77 | 65.4 |
TraesCS5D01G246400.1 | Wheat | mitochondrion | 36.38 | 64.71 |
OQU90810 | Sorghum | mitochondrion | 36.77 | 64.29 |
Zm00001d034509_P002 | Maize | mitochondrion | 35.99 | 63.14 |
EES10663 | Sorghum | mitochondrion | 36.58 | 56.46 |
TraesCS5A01G239300.1 | Wheat | mitochondrion | 35.41 | 56.35 |
HORVU5Hr1G068590.3 | Barley | plastid | 35.21 | 50.99 |
GSMUA_Achr10P... | Banana | plastid | 14.98 | 45.83 |
Bra029156.1-P | Field mustard | cytosol, endoplasmic reticulum | 5.25 | 24.11 |
Bra015574.1-P | Field mustard | plastid | 13.04 | 23.67 |
Protein Annotations
MapMan:17.7.1.1.5 | Gene3D:3.40.1370.10 | EnsemblPlantsGene:Bra031109 | EnsemblPlants:Bra031109.1 | EnsemblPlants:Bra031109.1-P | GO:GO:0003674 |
GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR002083 | InterPro:IPR008974 | InterPro:IPR023574 |
UniProt:M4EQN6 | InterPro:MATH/TRAF_dom | HAMAP:MF_01328_B | PFAM:PF00573 | PANTHER:PTHR10746 | PANTHER:PTHR10746:SF11 |
InterPro:Ribosomal_L4/L1e | InterPro:Ribosomal_L4_dom_sf | InterPro:Ribosomal_uL4/L1e | SUPFAM:SSF49599 | SUPFAM:SSF52166 | TIGRFAMs:TIGR03953 |
InterPro:TRAF-like | UniParc:UPI000254296A | SEG:seg | : | : | : |
Description
AT2G20060 (E=1e-135) | ribosomal protein L4 family protein
Coordinates
chrA09:-:32443003..32449934
Molecular Weight (calculated)
57703.4 Da
IEP (calculated)
10.273
GRAVY (calculated)
-0.318
Length
514 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAASISRRI VRTFGSFSAS GNGLTSLPCD LKCGIISLVS NRKHSTSILT PDDNFPYDLL AKKTLITPDR TIGQYQDLVI PVTNFQNEDK GFMVLAGDVF
101: DVPIRKDIIH HVVRWQLAKR QQGTHSTKTI SEVSGTGRKP WNQKGTGRAR HGTLRGPQFR GGCVMHGPKP RSHAIKINKQ VRRLGLKIAL SARAAEGKLL
201: VFDDMALPTH KTKNIVNYYN QMENTKKVLV VEGGPIDEKL KLATQNLHYV NILPSIGLNV YSILLHDTLV MSRDAVDKIT ELTRGRGTEI NSSYSLEANL
301: GVTRVLRDER PSSKIVTIAG YSVIKERHEP YESSVFEAAD GAVKRFNAAK KEWGFGQLIS LATFQNTNQG YMCRILVLLV LRSSSLNQLS NRRKSHSYQT
401: HQTMFSLGRF FVFSSLEDKF YYSDDFLVGD RYWRLGFNPK GDGEGRPHAL PIYLYAQGFR PNAVATNTWG AVNLRMTQKG GIDVNVEWND VPEFEHLMSL
501: TKLHFRCSFS IFTS
101: DVPIRKDIIH HVVRWQLAKR QQGTHSTKTI SEVSGTGRKP WNQKGTGRAR HGTLRGPQFR GGCVMHGPKP RSHAIKINKQ VRRLGLKIAL SARAAEGKLL
201: VFDDMALPTH KTKNIVNYYN QMENTKKVLV VEGGPIDEKL KLATQNLHYV NILPSIGLNV YSILLHDTLV MSRDAVDKIT ELTRGRGTEI NSSYSLEANL
301: GVTRVLRDER PSSKIVTIAG YSVIKERHEP YESSVFEAAD GAVKRFNAAK KEWGFGQLIS LATFQNTNQG YMCRILVLLV LRSSSLNQLS NRRKSHSYQT
401: HQTMFSLGRF FVFSSLEDKF YYSDDFLVGD RYWRLGFNPK GDGEGRPHAL PIYLYAQGFR PNAVATNTWG AVNLRMTQKG GIDVNVEWND VPEFEHLMSL
501: TKLHFRCSFS IFTS
001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR
Arabidopsis Description
50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [mitochondrion,plastid]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.