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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 4
  • mitochondrion 6
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY13887 Canola mitochondrion 52.14 93.06
AT2G20060.1 Thale cress mitochondrion, plastid 47.67 81.67
Solyc10g047150.1.1 Tomato cytosol 9.34 75.0
Solyc12g088730.1.1 Tomato endoplasmic reticulum 42.22 71.15
PGSC0003DMT400039845 Potato mitochondrion 41.83 68.91
KRH36504 Soybean mitochondrion 41.44 68.71
Os11t0585700-01 Rice mitochondrion 37.74 67.83
VIT_10s0116g00180.t01 Wine grape mitochondrion 41.25 67.3
GSMUA_Achr7P19520_001 Banana mitochondrion 38.13 66.89
KRH11490 Soybean mitochondrion 41.05 66.56
TraesCS6B01G099200.1 Wheat mitochondrion 37.16 66.09
TraesCS6A01G074600.1 Wheat mitochondrion 36.97 65.74
TraesCS5B01G237900.1 Wheat mitochondrion 36.77 65.62
HORVU6Hr1G013230.3 Barley mitochondrion 36.97 65.52
TraesCSU01G122900.1 Wheat mitochondrion 36.77 65.4
TraesCS5D01G246400.1 Wheat mitochondrion 36.38 64.71
OQU90810 Sorghum mitochondrion 36.77 64.29
Zm00001d034509_P002 Maize mitochondrion 35.99 63.14
EES10663 Sorghum mitochondrion 36.58 56.46
TraesCS5A01G239300.1 Wheat mitochondrion 35.41 56.35
HORVU5Hr1G068590.3 Barley plastid 35.21 50.99
GSMUA_Achr10P... Banana plastid 14.98 45.83
Bra029156.1-P Field mustard cytosol, endoplasmic reticulum 5.25 24.11
Bra015574.1-P Field mustard plastid 13.04 23.67
Protein Annotations
MapMan:17.7.1.1.5Gene3D:3.40.1370.10EnsemblPlantsGene:Bra031109EnsemblPlants:Bra031109.1EnsemblPlants:Bra031109.1-PGO:GO:0003674
GO:GO:0003735GO:GO:0005198GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005840GO:GO:0006412GO:GO:0008150GO:GO:0008152
GO:GO:0009058GO:GO:0009987GO:GO:0019538InterPro:IPR002083InterPro:IPR008974InterPro:IPR023574
UniProt:M4EQN6InterPro:MATH/TRAF_domHAMAP:MF_01328_BPFAM:PF00573PANTHER:PTHR10746PANTHER:PTHR10746:SF11
InterPro:Ribosomal_L4/L1eInterPro:Ribosomal_L4_dom_sfInterPro:Ribosomal_uL4/L1eSUPFAM:SSF49599SUPFAM:SSF52166TIGRFAMs:TIGR03953
InterPro:TRAF-likeUniParc:UPI000254296ASEG:seg:::
Description
AT2G20060 (E=1e-135) | ribosomal protein L4 family protein
Coordinates
chrA09:-:32443003..32449934
Molecular Weight (calculated)
57703.4 Da
IEP (calculated)
10.273
GRAVY (calculated)
-0.318
Length
514 amino acids
Sequence
(BLAST)
001: MAAASISRRI VRTFGSFSAS GNGLTSLPCD LKCGIISLVS NRKHSTSILT PDDNFPYDLL AKKTLITPDR TIGQYQDLVI PVTNFQNEDK GFMVLAGDVF
101: DVPIRKDIIH HVVRWQLAKR QQGTHSTKTI SEVSGTGRKP WNQKGTGRAR HGTLRGPQFR GGCVMHGPKP RSHAIKINKQ VRRLGLKIAL SARAAEGKLL
201: VFDDMALPTH KTKNIVNYYN QMENTKKVLV VEGGPIDEKL KLATQNLHYV NILPSIGLNV YSILLHDTLV MSRDAVDKIT ELTRGRGTEI NSSYSLEANL
301: GVTRVLRDER PSSKIVTIAG YSVIKERHEP YESSVFEAAD GAVKRFNAAK KEWGFGQLIS LATFQNTNQG YMCRILVLLV LRSSSLNQLS NRRKSHSYQT
401: HQTMFSLGRF FVFSSLEDKF YYSDDFLVGD RYWRLGFNPK GDGEGRPHAL PIYLYAQGFR PNAVATNTWG AVNLRMTQKG GIDVNVEWND VPEFEHLMSL
501: TKLHFRCSFS IFTS
Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)
001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR
Arabidopsis Description
50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [mitochondrion,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.