Factsheet for Bra029156.1-P

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

plastid 3
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 3
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, endoplasmic reticulum
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
EpiLoc:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62346	Soybean	plastid	43.75	24.38
Bra015574.1-P	Field mustard	plastid	46.43	18.37
KRH38064	Soybean	plastid	24.11	16.36
KRH66493	Soybean	endoplasmic reticulum, nucleus, plastid	43.75	15.81
VIT_06s0004g06140.t01	Wine grape	plastid	40.18	15.52
KRH48823	Soybean	plastid	41.96	15.51
Os03t0265400-01	Rice	plastid	42.86	14.86
GSMUA_Achr8P02340_001	Banana	plastid	36.61	14.59
EER95130	Sorghum	plastid	37.5	14.14
TraesCS4A01G091100.1	Wheat	plastid	38.39	13.44
Solyc07g061900.2.1	Tomato	plastid	33.93	13.19
HORVU4Hr1G060970.4	Barley	plastid	37.5	13.17
TraesCS4B01G213600.1	Wheat	golgi, plastid	37.5	13.17
TraesCS4D01G214300.1	Wheat	plastid	37.5	13.17
PGSC0003DMT400018162	Potato	cytosol	33.04	10.57
Bra031109.1-P	Field mustard	mitochondrion	24.11	5.25

Protein Annotations

Gene3D:3.40.1370.10	MapMan:35.1	EnsemblPlantsGene:Bra029156	EnsemblPlants:Bra029156.1	EnsemblPlants:Bra029156.1-P	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0019538	InterPro:IPR023574	UniProt:M4EK39	InterPro:Ribosomal_L4_dom_sf
SUPFAM:SSF52166	TMHMM:TMhelix	UniParc:UPI00025400E8	:	:	:

Description

AT1G07320 (E=6e-021) RPL4 | RPL4; poly(U) binding / structural constituent of ribosome

Coordinates

chrA03:+:6613100..6613438

Molecular Weight (calculated)

12433.1 Da

IEP (calculated)

7.516

GRAVY (calculated)

0.003

Length

112 amino acids

Sequence
(BLAST)

001: MNSFTTIAPP DAAALAITVD IASLFSIVSK VATLLIISYE REKIGETYLD LRTASEEIMR SVFHHAIVTD LQNKRQGTAS TLTCGEVRGG RIKPRGRYMK
101: ITTEFNPLME EI

Best Arabidopsis Sequence Match ( AT1G07320.2 )
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHQIPKTY ISVSKLGSGR VSKPLSVSSQ LATLPILSFE GEKVGETYLD LKAAPEDTAR AVVHRAIVTD LNNKRRGTAS
101: TLTRGEVRGG GIKPYSQKKT GHARRGSQRT PLRPGGGVVF GPRPKDWSIK INRKEKKLAI STALSSAASA EGGAIVVEEF GEKFEKPKTK DFLAAMQRWG
201: LDPKEKAMFL MIDVDENVAK SSRNIGTLRM LTPRTLNLFD ILNADKLVLT PAAVEFLNAR YGVDAVEEED DDEDETEEEA

Arabidopsis Description

RPL4RPL4 [Source:UniProtKB/TrEMBL;Acc:A0A178WQG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.