Factsheet for HORVU4Hr1G060970.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	plastid
Predotar:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G214300.1	Wheat	plastid	80.25	80.25
TraesCS4A01G091100.1	Wheat	plastid	79.62	79.38
TraesCS4B01G213600.1	Wheat	golgi, plastid	74.92	74.92
EER95130	Sorghum	plastid	66.14	71.04
Os03t0265400-01	Rice	plastid	67.4	66.56
GSMUA_Achr8P02340_001	Banana	plastid	51.41	58.36
AT1G07320.1	Thale cress	plastid	51.1	57.8
Bra015574.1-P	Field mustard	plastid	49.84	56.18
CDY06698	Canola	plastid	49.84	56.18
CDY10268	Canola	plastid	50.47	55.9
KRH48823	Soybean	plastid	52.98	55.78
KRH66493	Soybean	endoplasmic reticulum, nucleus, plastid	53.6	55.16
VIT_06s0004g06140.t01	Wine grape	plastid	49.84	54.83
Solyc07g061900.2.1	Tomato	plastid	49.22	54.51
KRH38064	Soybean	plastid	27.27	52.73
KRH62346	Soybean	plastid	31.66	50.25
PGSC0003DMT400018162	Potato	cytosol	46.08	42.0
Bra029156.1-P	Field mustard	cytosol, endoplasmic reticulum	13.17	37.5
HORVU6Hr1G013230.3	Barley	mitochondrion	21.32	23.45
HORVU5Hr1G068590.3	Barley	plastid	20.06	18.03

Protein Annotations

MapMan:17.7.2.1.4	Gene3D:3.40.1370.10	UniProt:A0A287P9T7	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0008266	GO:GO:0009058	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536
GO:GO:0009570	GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0022626
EnsemblPlantsGene:HORVU4Hr1G060970	EnsemblPlants:HORVU4Hr1G060970.4	InterPro:IPR023574	HAMAP:MF_01328_B	PFAM:PF00573	PANTHER:PTHR10746
InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166	TIGRFAMs:TIGR03953	UniParc:UPI000B47A140
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrchr4H:-:511790995..511792078

Molecular Weight (calculated)

34477.5 Da

IEP (calculated)

7.674

GRAVY (calculated)

-0.397

Length

319 amino acids

Sequence
(BLAST)

001: MPVSSVASPL LLSLSASSSS FLSSSSSVSF LPSPSSSSSF PHASVRGRPS ASILRALRAE ATTLPVINFT GEKVGEVALD IKAAPPSTAR AVVHRALITD
101: RQNARRGTAS TLTRGEVRGG GRKPYGQKKT GKARRGSVRT PLRPGGGVIF GPKPRDWTIK INRKEKRLAI STALASAAVA NDSFVVQEFD EEFATGPRTR
201: DFVAALQRWG LDPREKAMFF STELDDNVRL SGRNIGTLKM LTPRTLNLYD ILDARKHFFT PAAIEYLNSR YGTTGFDEFV GEDGEDDGEE EEEEEAITEE
301: AAQEGSEVVH VQTGCEVNT

Best Arabidopsis Sequence Match ( AT1G07320.2 )
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHQIPKTY ISVSKLGSGR VSKPLSVSSQ LATLPILSFE GEKVGETYLD LKAAPEDTAR AVVHRAIVTD LNNKRRGTAS
101: TLTRGEVRGG GIKPYSQKKT GHARRGSQRT PLRPGGGVVF GPRPKDWSIK INRKEKKLAI STALSSAASA EGGAIVVEEF GEKFEKPKTK DFLAAMQRWG
201: LDPKEKAMFL MIDVDENVAK SSRNIGTLRM LTPRTLNLFD ILNADKLVLT PAAVEFLNAR YGVDAVEEED DDEDETEEEA

Arabidopsis Description

RPL4RPL4 [Source:UniProtKB/TrEMBL;Acc:A0A178WQG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.