CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH38064	Soybean	plastid	57.21	69.7
KRH66493	Soybean	endoplasmic reticulum, nucleus, plastid	86.57	56.13
KRH48823	Soybean	plastid	72.64	48.18
Bra029156.1-P	Field mustard	cytosol, endoplasmic reticulum	24.38	43.75
AT1G07320.1	Thale cress	plastid	51.74	36.88
CDY06698	Canola	plastid	51.74	36.75
VIT_06s0004g06140.t01	Wine grape	plastid	51.74	35.86
CDY10268	Canola	plastid	51.24	35.76
GSMUA_Achr8P02340_001	Banana	plastid	49.25	35.23
Solyc07g061900.2.1	Tomato	plastid	48.76	34.03
EER95130	Sorghum	plastid	49.25	33.33
Os03t0265400-01	Rice	plastid	52.74	32.82
HORVU4Hr1G060970.4	Barley	plastid	50.25	31.66
TraesCS4B01G213600.1	Wheat	golgi, plastid	50.25	31.66
TraesCS4D01G214300.1	Wheat	plastid	49.25	31.03
TraesCS4A01G091100.1	Wheat	plastid	49.25	30.94
PGSC0003DMT400018162	Potato	cytosol	45.27	26.0
KRH36504	Soybean	mitochondrion	26.37	17.1
KRH11490	Soybean	mitochondrion	25.37	16.09

Protein Annotations

EntrezGene:100781724	Gene3D:3.40.1370.10	MapMan:35.1	EMBL:ACUP02002235	EnsemblPlantsGene:GLYMA_04G101800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022626
InterPro:IPR023574	UniProt:K7KJA2	EnsemblPlants:KRH62346	ProteinID:KRH62346	ProteinID:KRH62346.1	PFAM:PF00573
PANTHER:PTHR10746	PANTHER:PTHR10746:SF12	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166
UniParc:UPI000233A22C	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:9378086..9378691

Molecular Weight (calculated)

22004.5 Da

IEP (calculated)

10.595

GRAVY (calculated)

-0.205

Length

201 amino acids

Sequence
(BLAST)

001: MASLSLSLST PTTPTSLSFT SSSIFFSSHQ FHTHNNSFKS NNFPILPSKN PLSISCKASP PLPVLNFSGE KVGESFLDLR FTPPDTARVV VHHAVVTDLQ
101: NKRRGTASTL TRGEVRGGGR KPFLQKKTSR AYRPCGGVIF GPKPHDWCIK INCKEKRLAI STAVANVVAS AVVVEDFAAE FAEKLKTKEF IAAMKLLQER
201: E

Best Arabidopsis Sequence Match ( AT1G07320.1 )
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHQIPKTY ISVSKLGSGR VSKPLSVSSQ LATLPILSFE GEKVGETYLD LKAAPEDTAR AVVHRAIVTD LNNKRRGTAS
101: TLTRGEVRGG GIKPYSQKKT GHARRGSQRT PLRPGGGVVF GPRPKDWSIK INRKEKKLAI STALSSAASA EGGAIVVEEF GEKFEKPKTK DFLAAMQRWG
201: LDPKEKAMFL MIDVDENVAK SSRNIGTLRM LTPRTLNLFD ILNADKLVLT PAAVEFLNAR YGVDAVEEED DDEDETEGSE EA

Arabidopsis Description

RPL4RPL4 [Source:UniProtKB/TrEMBL;Acc:A0A178WQG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.