Factsheet for Solyc07g061900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 10

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018162	Potato	cytosol	80.21	66.0
VIT_06s0004g06140.t01	Wine grape	plastid	62.5	62.07
GSMUA_Achr8P02340_001	Banana	plastid	60.07	61.57
AT1G07320.1	Thale cress	plastid	59.03	60.28
Bra015574.1-P	Field mustard	plastid	57.64	58.66
CDY06698	Canola	plastid	57.64	58.66
CDY10268	Canola	plastid	57.99	57.99
KRH48823	Soybean	plastid	60.07	57.1
KRH38064	Soybean	plastid	32.29	56.36
KRH66493	Soybean	endoplasmic reticulum, nucleus, plastid	60.07	55.81
EER95130	Sorghum	plastid	55.56	53.87
HORVU4Hr1G060970.4	Barley	plastid	54.51	49.22
Os03t0265400-01	Rice	plastid	54.86	48.92
KRH62346	Soybean	plastid	34.03	48.76
TraesCS4D01G214300.1	Wheat	plastid	52.08	47.02
TraesCS4A01G091100.1	Wheat	plastid	52.08	46.88
TraesCS4B01G213600.1	Wheat	golgi, plastid	50.69	45.77
Solyc10g047150.1.1	Tomato	cytosol	8.68	39.06
Bra029156.1-P	Field mustard	cytosol, endoplasmic reticulum	13.19	33.93
Solyc12g088730.1.1	Tomato	endoplasmic reticulum	22.92	21.64

Protein Annotations

MapMan:17.7.2.1.4	Gene3D:3.40.1370.10	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735
GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0008266	GO:GO:0009058	GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538	GO:GO:0022626	InterPro:IPR023574
UniProt:K4CGM3	HAMAP:MF_01328_B	PFAM:PF00573	PANTHER:PTHR10746	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf
InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166	EnsemblPlantsGene:Solyc07g061900.2	EnsemblPlants:Solyc07g061900.2.1	TIGRFAMs:TIGR03953	UniParc:UPI000276B46B
SEG:seg	:	:	:	:	:

Description

50S ribosomal protein L4, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G07320) UniProtKB/Swiss-Prot;Acc:O50061]

Coordinates

chr7:+:64790511..64792365

Molecular Weight (calculated)

32130.8 Da

IEP (calculated)

7.681

GRAVY (calculated)

-0.639

Length

288 amino acids

Sequence
(BLAST)

001: MATSSSLSFF SSTIFFSNSN TLHSSKQQQQ KQLIFKPKQQ QFSIRSEAAA ATIPILSFDG TEVGSTTLNL KSAPLDTARA VVHRGLTTDL RNQRRGTAST
101: LTRAQVRGGG IKPYPQKKTG RARRGSNRTP LRPGGGVVFG PKPKDWSVKI NKKEKRLAIS TALSSATQNA IVVEEFDDKF EKPKTKEFID LMRRWGLDPK
201: EKSLFLMTEV SDNVILSSRN ISTLKMLTPR TLNLFDILDS EKLVFTKSAV EFLNERYGND DDDDDDWEVV DEEEEDGGEV EESAESSE

Best Arabidopsis Sequence Match ( AT1G07320.2 )
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHQIPKTY ISVSKLGSGR VSKPLSVSSQ LATLPILSFE GEKVGETYLD LKAAPEDTAR AVVHRAIVTD LNNKRRGTAS
101: TLTRGEVRGG GIKPYSQKKT GHARRGSQRT PLRPGGGVVF GPRPKDWSIK INRKEKKLAI STALSSAASA EGGAIVVEEF GEKFEKPKTK DFLAAMQRWG
201: LDPKEKAMFL MIDVDENVAK SSRNIGTLRM LTPRTLNLFD ILNADKLVLT PAAVEFLNAR YGVDAVEEED DDEDETEEEA

Arabidopsis Description

RPL4RPL4 [Source:UniProtKB/TrEMBL;Acc:A0A178WQG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.