CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015574.1-P	Field mustard	plastid	100.0	100.0
CDY10268	Canola	plastid	93.64	92.01
AT1G07320.1	Thale cress	plastid	86.93	87.23
VIT_06s0004g06140.t01	Wine grape	plastid	64.66	63.1
KRH48823	Soybean	plastid	63.96	59.74
GSMUA_Achr8P02340_001	Banana	plastid	59.01	59.43
KRH66493	Soybean	endoplasmic reticulum, nucleus, plastid	64.31	58.71
EER95130	Sorghum	plastid	61.13	58.25
Solyc07g061900.2.1	Tomato	plastid	58.66	57.64
KRH38064	Soybean	plastid	32.86	56.36
KRH62346	Soybean	plastid	36.75	51.74
Os03t0265400-01	Rice	plastid	59.01	51.7
TraesCS4B01G213600.1	Wheat	golgi, plastid	56.54	50.16
HORVU4Hr1G060970.4	Barley	plastid	56.18	49.84
TraesCS4D01G214300.1	Wheat	plastid	55.83	49.53
TraesCS4A01G091100.1	Wheat	plastid	55.83	49.38
PGSC0003DMT400018162	Potato	cytosol	54.06	43.71
CDY13887	Canola	mitochondrion	22.97	22.57
CDX81955	Canola	mitochondrion	23.32	22.22
CDY31994	Canola	mitochondrion	22.61	21.62
CDY05720	Canola	mitochondrion	22.26	21.58
CDY72492	Canola	mitochondrion	8.48	21.24

Protein Annotations

MapMan:17.7.2.1.4	Gene3D:3.40.1370.10	GO:A0A078F4R9	EnsemblPlants:CDY06698	ProteinID:CDY06698	ProteinID:CDY06698.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00122875001	InterPro:IPR023574	HAMAP:MF_01328_B	PFAM:PF00573
PANTHER:PTHR10746	PANTHER:PTHR10746:SF12	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166
TIGRFAMs:TIGR03953	UniParc:UPI0002544D84	SEG:seg	:	:	:

Description

BnaA10g04770D

Coordinates

chrLK031972:+:340511..341750

Molecular Weight (calculated)

30701.6 Da

IEP (calculated)

10.039

GRAVY (calculated)

-0.410

Length

283 amino acids

Sequence
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHKIPKTY ISVAKPSSGR VSKPLSVAAQ LATLPIFSFE GERVGETYLD LKTAPEETAR AVVHRAIVND LQNKRRGTAS
101: TLTRGEVRGG GIKPYAQKKT GNARRGSQRT PLRPGGGVVF GPKPRDWSIK INRKEKRLAI STAISSAASS EGGAIVVEEF GDRFEKPKTK DFLAAMKRWG
201: LDPKEKAMFL MIDVEENVAK SGRNIGTLRM LTPRTLNLFD ILNSDKLVLT PAAVEFLNAR YGVDSEIGEE DEDDAEGAEE PAE

Best Arabidopsis Sequence Match ( AT1G07320.1 )
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHQIPKTY ISVSKLGSGR VSKPLSVSSQ LATLPILSFE GEKVGETYLD LKAAPEDTAR AVVHRAIVTD LNNKRRGTAS
101: TLTRGEVRGG GIKPYSQKKT GHARRGSQRT PLRPGGGVVF GPRPKDWSIK INRKEKKLAI STALSSAASA EGGAIVVEEF GEKFEKPKTK DFLAAMQRWG
201: LDPKEKAMFL MIDVDENVAK SSRNIGTLRM LTPRTLNLFD ILNADKLVLT PAAVEFLNAR YGVDAVEEED DDEDETEGSE EA

Arabidopsis Description

RPL4RPL4 [Source:UniProtKB/TrEMBL;Acc:A0A178WQG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.