Factsheet for VIT_06s0004g06140.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 11

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G07320.1	Thale cress	plastid	64.14	65.96
Bra015574.1-P	Field mustard	plastid	63.1	64.66
CDY06698	Canola	plastid	63.1	64.66
GSMUA_Achr8P02340_001	Banana	plastid	62.41	64.41
CDY10268	Canola	plastid	62.76	63.19
Solyc07g061900.2.1	Tomato	plastid	62.07	62.5
KRH48823	Soybean	plastid	64.48	61.72
KRH66493	Soybean	endoplasmic reticulum, nucleus, plastid	63.1	59.03
KRH38064	Soybean	plastid	33.45	58.79
EER95130	Sorghum	plastid	59.66	58.25
KRH62346	Soybean	plastid	35.86	51.74
Os03t0265400-01	Rice	plastid	55.86	50.15
HORVU4Hr1G060970.4	Barley	plastid	54.83	49.84
TraesCS4B01G213600.1	Wheat	golgi, plastid	54.83	49.84
TraesCS4A01G091100.1	Wheat	plastid	54.83	49.69
TraesCS4D01G214300.1	Wheat	plastid	54.48	49.53
PGSC0003DMT400018162	Potato	cytosol	56.9	47.14
Bra029156.1-P	Field mustard	cytosol, endoplasmic reticulum	15.52	40.18
VIT_10s0116g00180.t01	Wine grape	mitochondrion	23.79	21.9

Protein Annotations

EntrezGene:104879610	MapMan:17.7.2.1.4	Gene3D:3.40.1370.10	EMBL:AM445236	ProteinID:CAN78612	ProteinID:CAN78612.1
ProteinID:CCB43498	ProteinID:CCB43498.1	UniProt:F6GUU0	EMBL:FN594951	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0008266	GO:GO:0009058	GO:GO:0009507	GO:GO:0009535
GO:GO:0009536	GO:GO:0009570	GO:GO:0009579	GO:GO:0009987	GO:GO:0016020	GO:GO:0019538
GO:GO:0022626	InterPro:IPR023574	HAMAP:MF_01328_B	PFAM:PF00573	PANTHER:PTHR10746	InterPro:Ribosomal_L4/L1e
InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166	TIGR:TC69923	TIGRFAMs:TIGR03953	UniParc:UPI00019836C6
ArrayExpress:VIT_06s0004g06140	EnsemblPlantsGene:VIT_06s0004g06140	EnsemblPlants:VIT_06s0004g06140.t01	unigene:Vvi.12511	RefSeq:XP_019076024.1	SEG:seg

Description

No Description!

Coordinates

chr6:-:6946656..6948290

Molecular Weight (calculated)

32098.2 Da

IEP (calculated)

10.129

GRAVY (calculated)

-0.535

Length

290 amino acids

Sequence
(BLAST)

001: MATTATSPSI SFFSSSIFGS SSRQNPNFLS TFKPNSFLKP LKPLSVRSDL VAIPILSFTG EKVGETQLNL KSAPLDTARA VVHRGIITDL QNRRRGTAST
101: LTRGEVRGGG KKPYPQKKTG RARRGSQRTP LRPGGGVVFG PKPRDWSIKI NRKEKRLAIS TAMSSAAVNT IVVEDFSDKF DKPKTKEFIS AMKRWGIDPK
201: EKSMFLMTEV SDNVRLSSRN IGTLKMLTPR TLNLFDILNS DKLVLTQETV DYLNRMYAVE AIGEEADDEE EYEDGDEGLE AADENSNVTE

Best Arabidopsis Sequence Match ( AT1G07320.2 )
(BLAST)

001: MASSATAPNS LSFFSSSLFL SSSHQIPKTY ISVSKLGSGR VSKPLSVSSQ LATLPILSFE GEKVGETYLD LKAAPEDTAR AVVHRAIVTD LNNKRRGTAS
101: TLTRGEVRGG GIKPYSQKKT GHARRGSQRT PLRPGGGVVF GPRPKDWSIK INRKEKKLAI STALSSAASA EGGAIVVEEF GEKFEKPKTK DFLAAMQRWG
201: LDPKEKAMFL MIDVDENVAK SSRNIGTLRM LTPRTLNLFD ILNADKLVLT PAAVEFLNAR YGVDAVEEED DDEDETEEEA

Arabidopsis Description

RPL4RPL4 [Source:UniProtKB/TrEMBL;Acc:A0A178WQG5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.