CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72492	Canola	mitochondrion	36.7	96.46
CDY13887	Canola	mitochondrion	87.21	89.93
CDY31994	Canola	mitochondrion	84.51	84.8
CDY05720	Canola	mitochondrion	80.47	81.85
AT2G20060.1	Thale cress	mitochondrion, plastid	81.48	80.67
Solyc10g047150.1.1	Tomato	cytosol	16.16	75.0
Solyc12g088730.1.1	Tomato	endoplasmic reticulum	72.05	70.16
VIT_10s0116g00180.t01	Wine grape	mitochondrion	73.06	68.89
Os11t0585700-01	Rice	mitochondrion	65.99	68.53
PGSC0003DMT400039845	Potato	mitochondrion	71.72	68.27
GSMUA_Achr7P19520_001	Banana	mitochondrion	67.34	68.26
KRH36504	Soybean	mitochondrion	70.37	67.42
HORVU6Hr1G013230.3	Barley	mitochondrion	65.32	66.9
TraesCS6A01G074600.1	Wheat	mitochondrion	64.98	66.78
TraesCS6B01G099200.1	Wheat	mitochondrion	64.98	66.78
TraesCS5B01G237900.1	Wheat	mitochondrion	64.65	66.67
TraesCSU01G122900.1	Wheat	mitochondrion	64.65	66.44
TraesCS5D01G246400.1	Wheat	mitochondrion	63.97	65.74
OQU90810	Sorghum	mitochondrion	64.98	65.65
KRH11490	Soybean	mitochondrion	70.03	65.62
Zm00001d034509_P002	Maize	mitochondrion	63.97	64.85
EES10663	Sorghum	mitochondrion	64.98	57.96
TraesCS5A01G239300.1	Wheat	mitochondrion	62.63	57.59
HORVU5Hr1G068590.3	Barley	plastid	61.28	51.27
GSMUA_Achr10P...	Banana	plastid	25.93	45.83
CDY10268	Canola	plastid	22.9	23.61
CDY06698	Canola	plastid	22.22	23.32

Protein Annotations

MapMan:17.7.1.1.5	Gene3D:3.40.1370.10	GO:A0A078CYQ6	EnsemblPlants:CDX81955	ProteinID:CDX81955	ProteinID:CDX81955.1
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00136923001	InterPro:IPR023574	HAMAP:MF_01328_B	PFAM:PF00573
PANTHER:PTHR10746	PANTHER:PTHR10746:SF11	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166
TIGRFAMs:TIGR03953	UniParc:UPI0004EEA2F4	SEG:seg	:	:	:

Description

BnaC08g36460D

Coordinates

chrLK031826:+:1640248..1641982

Molecular Weight (calculated)

33715.3 Da

IEP (calculated)

10.818

GRAVY (calculated)

-0.216

Length

297 amino acids

Sequence
(BLAST)

001: MAAASISRRI VRTFGSFSAS GNGLSSLPCD LKFPFFLFLI FHYFRDVDFI IFLWNKFGFQ PKFPYDLLAK KTVITPDRTI GQYQDLVIPV TNFQNEDKGF
101: MVLAGDVFDV PIRKDIIHHV VRWQLSKRQQ GTHSTKTISE VSGTGRKPWN QKGTGRARHG TLRGPQFRGG CVMHGPKPRS HAIKMNKQVR RLGLKIALSA
201: RAAEGKLLVF DEMALPTHKT KNIVNYYNQM ENTKKVLVVE GGPIDEKLKL ATQNLHYVNI LPSIGLNVYS ILLHDTLVMS RDAVNKIIER MHTPINR

Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)

001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR

Arabidopsis Description

50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.