Factsheet for Zm00001d034509_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0585700-01	Rice	mitochondrion	85.32	87.41
TraesCSU01G122900.1	Wheat	mitochondrion	81.23	82.35
HORVU6Hr1G013230.3	Barley	mitochondrion	81.23	82.07
TraesCS6A01G074600.1	Wheat	mitochondrion	80.89	82.01
EES10663	Sorghum	mitochondrion	92.83	81.68
TraesCS6B01G099200.1	Wheat	mitochondrion	80.55	81.66
TraesCS5D01G246400.1	Wheat	mitochondrion	79.86	80.97
TraesCS5B01G237900.1	Wheat	mitochondrion	79.52	80.9
CDY72492	Canola	mitochondrion	29.35	76.11
TraesCS5A01G239300.1	Wheat	mitochondrion	82.25	74.61
Solyc10g047150.1.1	Tomato	cytosol	15.7	71.88
GSMUA_Achr7P19520_001	Banana	mitochondrion	69.97	69.97
CDY05720	Canola	mitochondrion	66.21	66.44
VIT_10s0116g00180.t01	Wine grape	mitochondrion	70.65	65.71
HORVU5Hr1G068590.3	Barley	plastid	79.52	65.63
CDY13887	Canola	mitochondrion	64.16	65.28
CDY31994	Canola	mitochondrion	65.53	64.86
CDX81955	Canola	mitochondrion	64.85	63.97
Solyc12g088730.1.1	Tomato	endoplasmic reticulum	66.55	63.93
PGSC0003DMT400039845	Potato	mitochondrion	67.24	63.14
KRH36504	Soybean	mitochondrion	66.21	62.58
AT2G20060.1	Thale cress	mitochondrion, plastid	63.82	62.33
KRH11490	Soybean	mitochondrion	66.21	61.2
GSMUA_Achr10P...	Banana	plastid	30.38	52.98
Bra031109.1-P	Field mustard	mitochondrion	63.14	35.99

Protein Annotations

MapMan:17.7.1.1.5	Gene3D:3.40.1370.10	UniProt:A0A1D6L861	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023574
HAMAP:MF_01328_B	ProteinID:ONM10436.1	PFAM:PF00573	PANTHER:PTHR10746	PANTHER:PTHR10746:SF11	InterPro:Ribosomal_L4/L1e
InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166	TIGRFAMs:TIGR03953	UniParc:UPI0002218FB1	EnsemblPlantsGene:Zm00001d034509
EnsemblPlants:Zm00001d034509_P002	EnsemblPlants:Zm00001d034509_T002	SEG:seg	:	:	:

Description

50S ribosomal protein L4

Coordinates

chr1:-:294981881..294987978

Molecular Weight (calculated)

32709.9 Da

IEP (calculated)

11.010

GRAVY (calculated)

-0.369

Length

293 amino acids

Sequence
(BLAST)

001: MRALARAASL LRRAAGSAPT TASLYHPPRN VGPCLVKNLP GFFFNGYSTL LAPPNEVLIP PELLSSRTVW TPDRELGQYE DLVARVTNFH NEDKGFMVLD
101: GDVFDVPIRK DIVHRVVRWQ LAKRQQGTHS TKTISEVSGT GRKPYPQKGT GKARHGTLRG AQFRGGATMH GPKPRSHAIK LQKKVRRLGL KIALSARTAE
201: GKLLIFEDLE VPSHKTKNIV QYIRQMDDSK KVLLVDGGDI DKKLKLATQN LHYVNVLPSI GLNVYSILQH DTLVMTRAAI NRIVERMHTP INR

Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)

001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR

Arabidopsis Description

50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.