Factsheet for TraesCS5A01G239300.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G246400.1	Wheat	mitochondrion	78.95	88.24
TraesCS5B01G237900.1	Wheat	mitochondrion	78.33	87.85
TraesCS6A01G074600.1	Wheat	mitochondrion	77.4	86.51
Os11t0585700-01	Rice	mitochondrion	73.99	83.57
Zm00001d034509_P002	Maize	mitochondrion	74.61	82.25
OQU90810	Sorghum	mitochondrion	73.68	80.95
CDY72492	Canola	mitochondrion	26.01	74.34
EES10663	Sorghum	mitochondrion	74.3	72.07
Solyc10g047150.1.1	Tomato	cytosol	14.24	71.88
GSMUA_Achr7P19520_001	Banana	mitochondrion	64.09	70.65
HORVU5Hr1G068590.3	Barley	plastid	77.4	70.42
CDY05720	Canola	mitochondrion	58.82	65.07
VIT_10s0116g00180.t01	Wine grape	mitochondrion	62.85	64.44
CDY13887	Canola	mitochondrion	57.28	64.24
CDY31994	Canola	mitochondrion	58.82	64.19
AT2G20060.1	Thale cress	mitochondrion, plastid	58.51	63.0
CDX81955	Canola	mitochondrion	57.59	62.63
Solyc12g088730.1.1	Tomato	endoplasmic reticulum	58.2	61.64
KRH36504	Soybean	mitochondrion	58.82	61.29
PGSC0003DMT400039845	Potato	mitochondrion	58.82	60.9
KRH11490	Soybean	mitochondrion	59.13	60.25
GSMUA_Achr10P...	Banana	plastid	25.7	49.4
Bra031109.1-P	Field mustard	mitochondrion	56.35	35.41
TraesCS4A01G091100.1	Wheat	plastid	20.74	20.94

Protein Annotations

MapMan:17.7.1.1.5	Gene3D:3.40.1370.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023574	HAMAP:MF_01328_B
PFAM:PF00573	PANTHER:PTHR10746	PANTHER:PTHR10746:SF11	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e
SUPFAM:SSF52166	TIGRFAMs:TIGR03953	EnsemblPlantsGene:TraesCS5A01G239300	EnsemblPlants:TraesCS5A01G239300.1	SEG:seg	:

Description

No Description!

Coordinates

chr5A:-:455463911..455468608

Molecular Weight (calculated)

35646.3 Da

IEP (calculated)

10.752

GRAVY (calculated)

-0.304

Length

323 amino acids

Sequence
(BLAST)

001: MSIRSLIAAS RSRHALAAAT ISQATSRAHQ HACVPPLLSG LGPLARAFSS SAAVADVNSG VRVMEGQILP NVYSKGYSTL LAPANEALIP PELLSSKTVW
101: TPDRELGQYE DLVARVTNFH NEDNGFMVLD GDVFDVPIRK DIVHRVVRWQ LAKRQQGTHS TKTISEVSGT GRKPYKQKGT GRARHGTLRG CQFRGGATMH
201: GPKPRSHAFK LQKKVRRLGL KIALSARTAE GKLCIFEDLE VPSHKTKNIV QYIKQMDDTK KVLLVDGGDI DKKLKLATKN LHYVNVIPSI GLNVYSILQH
301: DTLVMTRDAI NRIVERMHTP ISR

Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)

001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR

Arabidopsis Description

50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.