CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH11490	Soybean	mitochondrion	96.13	94.01
CDY72492	Canola	mitochondrion	31.61	86.73
Solyc10g047150.1.1	Tomato	cytosol	15.48	75.0
CDY05720	Canola	mitochondrion	70.0	74.32
CDY13887	Canola	mitochondrion	68.71	73.96
CDY31994	Canola	mitochondrion	69.35	72.64
AT2G20060.1	Thale cress	mitochondrion, plastid	69.35	71.67
Solyc12g088730.1.1	Tomato	endoplasmic reticulum	70.32	71.48
CDX81955	Canola	mitochondrion	67.42	70.37
PGSC0003DMT400039845	Potato	mitochondrion	70.32	69.87
Os11t0585700-01	Rice	mitochondrion	63.55	68.88
VIT_10s0116g00180.t01	Wine grape	mitochondrion	69.03	67.94
OQU90810	Sorghum	mitochondrion	63.55	67.01
Zm00001d034509_P002	Maize	mitochondrion	62.58	66.21
HORVU6Hr1G013230.3	Barley	mitochondrion	61.94	66.21
TraesCSU01G122900.1	Wheat	mitochondrion	61.61	66.09
TraesCS6A01G074600.1	Wheat	mitochondrion	61.61	66.09
GSMUA_Achr7P19520_001	Banana	mitochondrion	62.26	65.87
TraesCS6B01G099200.1	Wheat	mitochondrion	61.29	65.74
TraesCS5B01G237900.1	Wheat	mitochondrion	60.97	65.62
TraesCS5D01G246400.1	Wheat	mitochondrion	60.97	65.4
EES10663	Sorghum	mitochondrion	64.84	60.36
TraesCS5A01G239300.1	Wheat	mitochondrion	61.29	58.82
HORVU5Hr1G068590.3	Barley	plastid	61.29	53.52
GSMUA_Achr10P...	Banana	plastid	22.58	41.67
Bra031109.1-P	Field mustard	mitochondrion	68.71	41.44
KRH38064	Soybean	plastid	16.45	30.91
KRH62346	Soybean	plastid	17.1	26.37
KRH48823	Soybean	plastid	24.19	24.75
KRH66493	Soybean	endoplasmic reticulum, nucleus, plastid	24.52	24.52

Protein Annotations

EntrezGene:100784680	MapMan:17.7.1.1.5	Gene3D:3.40.1370.10	EMBL:ACUP02005377	EnsemblPlantsGene:GLYMA_09G007300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0022626
UniProt:I1KZW0	InterPro:IPR023574	EnsemblPlants:KRH36504	ProteinID:KRH36504	ProteinID:KRH36504.1	HAMAP:MF_01328_B
PFAM:PF00573	PANTHER:PTHR10746	PANTHER:PTHR10746:SF11	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e
SUPFAM:SSF52166	TIGRFAMs:TIGR03953	UniParc:UPI000233902B	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:528370..534015

Molecular Weight (calculated)

34388.9 Da

IEP (calculated)

10.693

GRAVY (calculated)

-0.282

Length

310 amino acids

Sequence
(BLAST)

001: MAALISKRIL RCSSGSLHSL GRCYFDSPGF ASIYKPRDVC GGLSGERMFS ADRSLVGSMV RQFSTSILTP GDDDSAFPSD LLSKKILATS ERTIGLCQDL
101: LIPVTNFHNE DKGYMVLPGD VFDLPIRKDI IHRVVRWQLA KRQQGTHSTK TISEVSGTGR KPWNQKGTGR ARHGSLRGPQ FRGGATMHGP KPRSHAFKVN
201: KKVRRLGLKI ALSARAAEGK LLVFEDLAVP THKTKNIVNY YNQMEDTKKL LLVDGAIDEK LKLSTQNLHY VNVLPSIGLN VYSILLHDTL VMSRAAVSKI
301: VERMHTPINR

Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)

001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR

Arabidopsis Description

50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.