Factsheet for TraesCS5D01G246400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 5
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G237900.1	Wheat	mitochondrion	97.23	97.57
OQU90810	Sorghum	mitochondrion	85.81	84.35
Os11t0585700-01	Rice	mitochondrion	82.35	83.22
Zm00001d034509_P002	Maize	mitochondrion	80.97	79.86
TraesCS5A01G239300.1	Wheat	mitochondrion	88.24	78.95
CDY72492	Canola	mitochondrion	28.72	73.45
Solyc10g047150.1.1	Tomato	cytosol	15.92	71.88
EES10663	Sorghum	mitochondrion	81.31	70.57
GSMUA_Achr7P19520_001	Banana	mitochondrion	70.59	69.62
HORVU5Hr1G068590.3	Barley	plastid	85.12	69.3
CDY05720	Canola	mitochondrion	66.44	65.75
CDY13887	Canola	mitochondrion	65.4	65.62
CDY31994	Canola	mitochondrion	67.13	65.54
VIT_10s0116g00180.t01	Wine grape	mitochondrion	70.59	64.76
CDX81955	Canola	mitochondrion	65.74	63.97
AT2G20060.1	Thale cress	mitochondrion, plastid	65.74	63.33
Solyc12g088730.1.1	Tomato	endoplasmic reticulum	66.44	62.95
KRH36504	Soybean	mitochondrion	65.4	60.97
PGSC0003DMT400039845	Potato	mitochondrion	65.4	60.58
KRH11490	Soybean	mitochondrion	65.74	59.94
GSMUA_Achr10P...	Banana	plastid	28.03	48.21
Bra031109.1-P	Field mustard	mitochondrion	64.71	36.38
TraesCS4D01G214300.1	Wheat	plastid	23.88	21.63

Protein Annotations

MapMan:17.7.1.1.5	Gene3D:3.40.1370.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR023574	HAMAP:MF_01328_B
PFAM:PF00573	PANTHER:PTHR10746	PANTHER:PTHR10746:SF11	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e
SUPFAM:SSF52166	SignalP:SignalP-noTM	TIGRFAMs:TIGR03953	EnsemblPlantsGene:TraesCS5D01G246400	EnsemblPlants:TraesCS5D01G246400.1	SEG:seg

Description

No Description!

Coordinates

chr5D:-:354501011..354504227

Molecular Weight (calculated)

32230.5 Da

IEP (calculated)

10.490

GRAVY (calculated)

-0.302

Length

289 amino acids

Sequence
(BLAST)

001: MHALACAASL LRRAMACLPQ LGAIGCDTPL LAKILPNVYS KGYSTLLAPA NEALIPPELL SSKTVWTPDR ELGQYEDLVA RVTNFHNEDN GFMVLDGDVF
101: DVPIRKDIVH RVVRWQLAKR QQGTHSTKTI SEVSGTGRKP YKQKGTGRAR HGTLRGCQFR GGATMHGPKP RSHAFKLQKK VRRLGLKIAL SARTAEGKLC
201: IFEDLEVPSH KTKNIVQYIK QMDDTKKVLL VDGGDIDKKL KLATKNLHYV NVIPSIGLNV YSILQHDTLV MTREAINRIV ERMHTPISR

Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)

001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR

Arabidopsis Description

50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.