Subcellular Localization
min:
: max
Winner_takes_all: plastid, mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 4
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY72492 | Canola | mitochondrion | 36.67 | 97.35 |
| CDY05720 | Canola | mitochondrion | 85.67 | 88.01 |
| CDY31994 | Canola | mitochondrion | 85.67 | 86.82 |
| CDY13887 | Canola | mitochondrion | 82.67 | 86.11 |
| CDX81955 | Canola | mitochondrion | 80.67 | 81.48 |
| Solyc10g047150.1.1 | Tomato | cytosol | 15.67 | 73.44 |
| Solyc12g088730.1.1 | Tomato | endoplasmic reticulum | 73.33 | 72.13 |
| PGSC0003DMT400039845 | Potato | mitochondrion | 73.67 | 70.83 |
| VIT_10s0116g00180.t01 | Wine grape | mitochondrion | 74.33 | 70.79 |
| KRH36504 | Soybean | mitochondrion | 71.67 | 69.35 |
| GSMUA_Achr7P19520_001 | Banana | mitochondrion | 67.33 | 68.94 |
| Os11t0585700-01 | Rice | mitochondrion | 65.33 | 68.53 |
| KRH11490 | Soybean | mitochondrion | 71.33 | 67.51 |
| HORVU6Hr1G013230.3 | Barley | mitochondrion | 65.0 | 67.24 |
| TraesCS6A01G074600.1 | Wheat | mitochondrion | 64.33 | 66.78 |
| TraesCS6B01G099200.1 | Wheat | mitochondrion | 64.33 | 66.78 |
| TraesCS5B01G237900.1 | Wheat | mitochondrion | 64.0 | 66.67 |
| TraesCSU01G122900.1 | Wheat | mitochondrion | 64.0 | 66.44 |
| TraesCS5D01G246400.1 | Wheat | mitochondrion | 63.33 | 65.74 |
| OQU90810 | Sorghum | mitochondrion | 64.33 | 65.65 |
| Zm00001d034509_P002 | Maize | mitochondrion | 62.33 | 63.82 |
| TraesCS5A01G239300.1 | Wheat | mitochondrion | 63.0 | 58.51 |
| EES10663 | Sorghum | mitochondrion | 64.0 | 57.66 |
| HORVU5Hr1G068590.3 | Barley | plastid | 62.0 | 52.39 |
| Bra031109.1-P | Field mustard | mitochondrion | 81.67 | 47.67 |
| GSMUA_Achr10P... | Banana | plastid | 26.0 | 46.43 |
| AT1G07320.1 | Thale cress | plastid | 21.0 | 22.34 |
Protein Annotations
| MapMan:17.7.1.1.5 | Gene3D:3.40.1370.10 | EntrezGene:816525 | ProteinID:AAD24390.2 | ProteinID:AEC06960.1 | ArrayExpress:AT2G20060 |
| EnsemblPlantsGene:AT2G20060 | RefSeq:AT2G20060 | TAIR:AT2G20060 | RefSeq:AT2G20060-TAIR-G | EnsemblPlants:AT2G20060.1 | TAIR:AT2G20060.1 |
| EMBL:AY072419 | Unigene:At.39751 | EMBL:BT002156 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022626 | InterPro:IPR023574 | HAMAP:MF_01328_B |
| RefSeq:NP_565463.1 | PFAM:PF00573 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR10746 | PANTHER:PTHR10746:SF11 | UniProt:Q8VY61 | InterPro:Ribosomal_L4/L1e |
| InterPro:Ribosomal_L4_dom_sf | InterPro:Ribosomal_uL4/L1e | SUPFAM:SSF52166 | TIGRFAMs:TIGR03953 | UniParc:UPI00000AC302 | : |
Description
50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
Coordinates
chr2:+:8658981..8661558
Molecular Weight (calculated)
33265.5 Da
IEP (calculated)
10.970
GRAVY (calculated)
-0.348
Length
300 amino acids
Sequence
(BLAST)
(BLAST)
001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.