Factsheet for GSMUA_Achr7P19520_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 8

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72492	Canola	mitochondrion	31.74	82.3
Os11t0585700-01	Rice	mitochondrion	70.99	72.73
Solyc10g047150.1.1	Tomato	cytosol	15.7	71.88
TraesCS6A01G074600.1	Wheat	mitochondrion	70.31	71.28
TraesCSU01G122900.1	Wheat	mitochondrion	70.31	71.28
TraesCS5B01G237900.1	Wheat	mitochondrion	69.97	71.18
HORVU6Hr1G013230.3	Barley	mitochondrion	69.97	70.69
TraesCS5D01G246400.1	Wheat	mitochondrion	69.62	70.59
OQU90810	Sorghum	mitochondrion	70.65	70.41
TraesCS6B01G099200.1	Wheat	mitochondrion	69.28	70.24
CDY13887	Canola	mitochondrion	68.94	70.14
Zm00001d034509_P002	Maize	mitochondrion	69.97	69.97
CDY31994	Canola	mitochondrion	68.26	67.57
CDY05720	Canola	mitochondrion	67.24	67.47
CDX81955	Canola	mitochondrion	68.26	67.34
AT2G20060.1	Thale cress	mitochondrion, plastid	68.94	67.33
VIT_10s0116g00180.t01	Wine grape	mitochondrion	70.99	66.03
Solyc12g088730.1.1	Tomato	endoplasmic reticulum	67.58	64.92
PGSC0003DMT400039845	Potato	mitochondrion	68.26	64.1
TraesCS5A01G239300.1	Wheat	mitochondrion	70.65	64.09
EES10663	Sorghum	mitochondrion	71.67	63.06
KRH36504	Soybean	mitochondrion	65.87	62.26
KRH11490	Soybean	mitochondrion	65.53	60.57
GSMUA_Achr10P...	Banana	plastid	33.79	58.93
HORVU5Hr1G068590.3	Barley	plastid	68.94	56.9
Bra031109.1-P	Field mustard	mitochondrion	66.89	38.13
GSMUA_Achr8P02340_001	Banana	plastid	23.55	24.56

Protein Annotations

MapMan:17.7.1.1.5	Gene3D:3.40.1370.10	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr7G19520_001	EnsemblPlants:GSMUA_Achr7P19520_001
EnsemblPlants:GSMUA_Achr7T19520_001	InterPro:IPR023574	UniProt:M0TIY9	HAMAP:MF_01328_B	PFAM:PF00573	PANTHER:PTHR10746
PANTHER:PTHR10746:SF11	InterPro:Ribosomal_L4/L1e	InterPro:Ribosomal_L4_dom_sf	InterPro:Ribosomal_uL4/L1e	SUPFAM:SSF52166	TIGRFAMs:TIGR03953
UniParc:UPI0002958655	:	:	:	:	:

Description

50S ribosomal protein L4 [Source:GMGC_GENE;Acc:GSMUA_Achr7G19520_001]

Coordinates

chr7:+:22308383..22313898

Molecular Weight (calculated)

33003.4 Da

IEP (calculated)

11.303

GRAVY (calculated)

-0.349

Length

293 amino acids

Sequence
(BLAST)

001: MWNLARVAWN LRQSRRLSFA IPPSISATQI DPSFFKRGLP FTTCKGFSTL ETQESGGLIP SELLTKKTVL RPDRDIGQYA DLVTRVTNFH GEDKGFMVLA
101: GDVFDVPIRK DIIHRVVRWQ LAKRQQGTHS TKTISEVSGT GRKPYRQKGT GRARHGTLRG PQFRHGAIMH GPKPRSHAIK LQKKVRRLGL KIALSARTAE
201: GKLIVFEDLA LPSHKTKNIV NYVTQMENTK KVLLVDGGPI DDKLKLATRN LHYVNVLPSI GLNVYSILLH DVLVMTQDAV NRIVERMHTP INR

Best Arabidopsis Sequence Match ( AT2G20060.1 )
(BLAST)

001: MAASISRRIF RTFGSFSALG RSSSPNLSAN TSGNGLASLT NDLKYGMALL SNRKLSTSIL TPDDSFPSDL LTKKTVLTPD RTIGQYQDLV IPVTNFQNEE
101: KGFMVLAGDV FDVPIRKDII HNVVRWQLAK RQQGTHSTKT LSEVSGTGRK PWNQKGTGRA RHGTLRGPQF RGGCVMHGPK PRSHAIKMNK QVRRLGLKIA
201: LTARAAEGKL LVFDDLGLPT HKTKNIVNYY NQMENTKKVL VVEGGPIDEK LKLATQNLHY VNIIPSIGLN VYSILLHDTL LMSRDAVNKI VERMHTPINR

Arabidopsis Description

50S ribosomal protein L4 [Source:UniProtKB/TrEMBL;Acc:Q8VY61]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.