CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G01550.1	CDX70995	AT5G22290.1	21798944
AT3G01550.1	CDX88803	AT5G22290.1	21798944
AT3G01550.1	CDX92368	AT5G22290.1	21798944
AT3G01550.1	CDY09128	AT5G22290.1	21798944
AT3G01550.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74305	Canola	plastid	96.87	97.12
AT3G01550.1	Thale cress	mitochondrion, plastid	85.38	85.38
Os05t0170950-00	Rice	endoplasmic reticulum	14.88	62.64
PGSC0003DMT400001273	Potato	plastid	60.57	58.44
Solyc02g086650.2.1	Tomato	plastid	60.31	58.19
KRG93252	Soybean	plastid	57.96	54.41
Zm00001d017901_P001	Maize	cytosol, plasma membrane, plastid	15.4	53.64
VIT_14s0066g01000.t01	Wine grape	mitochondrion, plastid	59.79	53.13
CDY12390	Canola	plastid	51.7	49.25
CDY47555	Canola	plastid	52.22	49.14
HORVU1Hr1G025390.3	Barley	plastid	50.39	47.42
TraesCS1A01G115200.1	Wheat	plastid	50.39	47.42
Os01t0172100-01	Rice	plastid	48.56	47.33
TraesCS1D01G116600.1	Wheat	plastid	49.87	47.28
TraesCS1B01G135100.1	Wheat	plastid	50.13	46.83
EES17796	Sorghum	plastid	48.83	46.63
TraesCS3D01G131200.1	Wheat	plastid	48.04	46.23
TraesCS3A01G130300.1	Wheat	plastid	47.78	46.1
TraesCS3B01G149400.1	Wheat	plastid	47.78	45.86
Zm00001d039674_P001	Maize	plastid	48.56	44.82
KXG31751	Sorghum	plastid	48.04	43.81
Zm00001d037659_P001	Maize	plastid	47.78	42.86
HORVU3Hr1G024590.1	Barley	peroxisome	44.13	41.32
CDY16905	Canola	plastid	35.77	34.16
Zm00001d051000_P001	Maize	cytosol, endoplasmic reticulum, plasma membrane	19.84	34.08
CDY38448	Canola	plastid	35.77	34.08
Zm00001d034088_P001	Maize	extracellular	24.28	33.1
CDY34641	Canola	plastid	30.81	32.51
Zm00001d044715_P001	Maize	cytosol, plasma membrane, plastid	23.24	32.48
CDY55220	Canola	plastid	31.85	31.52
CDY52572	Canola	plastid	31.85	31.28
CDY43022	Canola	plastid	31.59	31.03
CDY25324	Canola	plastid	31.59	30.63
CDY48790	Canola	mitochondrion	32.11	30.52
CDX77632	Canola	plastid	32.64	30.34
CDY33455	Canola	plastid	32.11	30.22
CDY04362	Canola	plastid	18.54	29.71
CDY19859	Canola	plastid	31.85	29.47
CDY17274	Canola	plastid	31.85	29.47
CDY06630	Canola	plastid	32.11	27.21
CDY28750	Canola	plastid	31.59	26.89
CDY53419	Canola	mitochondrion	32.38	24.12

Protein Annotations

MapMan:24.2.1.1.1	GO:A0A078DSS2	EnsemblPlants:CDX91942	ProteinID:CDX91942	ProteinID:CDX91942.1	GO:GO:0003674
GO:GO:0005215	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021
GO:GO:0022857	GO:GO:0055085	EnsemblPlantsGene:GSBRNA2T00153578001	PFAM:PF03151	PANTHER:PTHR43973	PANTHER:PTHR43973:SF6
SUPFAM:SSF103481	InterPro:Sugar_P_trans_dom	TIGRFAMs:TIGR00817	TMHMM:TMhelix	InterPro:Tpt_PEP_transl	UniParc:UPI0004EEB135
SEG:seg	:	:	:	:	:

Description

BnaC03g32440D

Coordinates

chrLK031870:+:922930..925189

Molecular Weight (calculated)

41938.9 Da

IEP (calculated)

10.443

GRAVY (calculated)

0.432

Length

383 amino acids

Sequence
(BLAST)

001: MLLITPYPRL VSPLLATKST PESSFTRRAR ASSSSSSTSS SSYPWPFLRP KRRLNGFKLK SATVPGDVES GSLVKGLKLG GMFGVWYLLN IYYNIFNKQV
101: LRVYPYPATV TAFQLGCGTL MISIMWLLKL HPRPKVTPSQ FPAILQLAAA HTLGNLLTNV SLGRVNVSFT HTIKALEPFF TVLFSVLLLD EWPSLWIVCS
201: LLPIVAGVSL ASFTEASFNW IGFCSAMASN VTNQSRNVLS KKFMVEKEAL DNINLFSIIT IISLVLLVPV AILIDGFKFT PSQLHLATSQ GLTVKEFCLM
301: SLLAGVCLHS YQQVSYMILE MVSPVTHSVG NCVKRVVVIA SSILFFKTPV SPLNSIGTAT ALAGVYLYTR AKKVKPNPNS KSS

Best Arabidopsis Sequence Match ( AT3G01550.1 )
(BLAST)

001: MFALTFLNPN PRLPSPLFLA KSTPESALSR RSRAFSSSNS YPWRPNLRFN GFKLKSATVP ENVEGGDLES GSLVKGLKLG GMFGVWYLLN IYYNIFNKQV
101: LRVYPYPATV TAFQLGCGTL MIAIMWLLKL HPRPKFSPSQ FTVIVQLAVA HTLGNLLTNV SLGRVNVSFT HTIKAMEPFF TVLLSVLLLG EWPSLWIVCS
201: LLPIVAGVSL ASFTEASFNW IGFCSAMASN VTNQSRNVLS KKFMVGKDAL DNINLFSIIT IISFILLVPL AILIDGFKVT PSHLQVATSQ GLSVKEFCIM
301: SLLAGVCLHS YQQVSYMILE MVSPVTHSVG NCVKRVVVIT SSILFFKTPV SPLNSIGTAT ALAGVYLYSR AKRVQVKPNP KMS

Arabidopsis Description

PPT2Phosphoenolpyruvate/phosphate translocator 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T6]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.